Non-Coding RNA Search

Ss1.1-Pig4-TMW8024K10.5

Sequence:


               
               GGAGTGGCACCACGAGACCCAAGGCAGCAGCGTCCGAGGGCGTGCAGGTGAAAAGGGTCC
TGGAGAAAAGTCCCGGGAAGCTGCTCGTCAAGATGCCTTTTCAAGCCTCGCCGGGGAGCA
AGGCTGAAGGGGGTGGGGCCACCACGTCGGCCCAGGTCATGGTCATCAAACGCCCTGGCA
GGAAGCGAAAAGCTGAGGCCGACCCCCAGGCCATCCCCAAGAAGCGGGGCCGGAAGCCGG
GCAGTGTGGTGGCAGCTGCCGCCGCCGAGGCCAAGAAGAAAGCCGTGAAGGAGTCTTCCA
TCCGGTCCGTGCAAGAAACCGTGCTCCCCATCAAGAAGCGCAAGACCCGGGAGACGGTGA
GCATCGAGGTGAAGGAGGTGGTGAAGCCCCTGCTGGTGTCCACCCTCGGCGAGAAGAGCG
GGAAGGGACTGAAGACCTGCAAGAGCCCTGGGCGCAAGAGCAAGGAGGGCAGCGCCTCCT
CGCCCCCCAAGAAGGAGCATCACCACCACCACCACCACGCGGAGCCCCCGAAGGCGCCCG
CGCCGCTGCTCCCGCCCCCGCCCCCGCCCCCGCCCGAGCCGCAGAGCTCCGAGGACCCCG
CCAGCCCCCCCGAGCCCCAGGACTTGAGCAGCAACGTCTGCAGAGAGGAGAAGATGCCGA
GAGCGGGCTCGCTGGAGAGCGACGGCTGCCCCAAGGAGCCCGCTAAGACTCAGCCCGCCG
TCGCGACCGCCGCCACGGCCGCAGAAAAGTACAAACACCGAGGGGAGGGAGAGCGCAAAG
ACATTGTCTCGTCCTCCATGCCAAGGCCAAACAGAGAGGAGCCTGTGGACAGCCGGACGC
CCGTGACCGAGAGAGTTAGCTGACTTTGCGCAGAGCGGATGGCCAAGCAAACCAACAAGA
ATAAAGGCAGCTGTTGTCTCTTCTCCTTATGGGTAGGGCTCTGACAAAGCTTCCCGATTA
ACTGAAATAAAAAATATTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGGCACCACGAGACCCAAGGCAGCAGCGTCCGAGGGCGTGCAGGTGAAAAGGGTCC
TGGAGAAAAGTCCCGGGAAGCTGCTCGTCAAGATGCCTTTTCAAGCCTCGCCGGGGAGCA
AGGCTGAAGGGGGTGGGGCCACCACGTCGGCCCAGGTCATGGTCATCAAACGCCCTGGCA
GGAAGCGAAAAGCTGAGGCCGACCCCCAGGCCATCCCCAAGAAGCGGGGCCGGAAGCCGG
GCAGTGTGGTGGCAGCTGCCGCCGCCGAGGCCAAGAAGAAAGCCGTGAAGGAGTCTTCCA
TCCGGTCCGTGCAAGAAACCGTGCTCCCCATCAAGAAGCGCAAGACCCGGGAGACGGTGA
GCATCGAGGTGAAGGAGGTGGTGAAGCCCCTGCTGGTGTCCACCCTCGGCGAGAAGAGCG
GGAAGGGACTGAAGACCTGCAAGAGCCCTGGGCGCAAGAGCAAGGAGGGCAGCGCCTCCT
CGCCCCCCAAGAAGGAGCATCACCACCACCACCACCACGCGGAGCCCCCGAAGGCGCCCG
CGCCGCTGCTCCCGCCCCCGCCCCCGCCCCCGCCCGAGCCGCAGAGCTCCGAGGACCCCG
CCAGCCCCCCCGAGCCCCAGGACTTGAGCAGCAACGTCTGCAGAGAGGAGAAGATGCCGA
GAGCGGGCTCGCTGGAGAGCGACGGCTGCCCCAAGGAGCCCGCTAAGACTCAGCCCGCCG
TCGCGACCGCCGCCACGGCCGCAGAAAAGTACAAACACCGAGGGGAGGGAGAGCGCAAAG
ACATTGTCTCGTCCTCCATGCCAAGGCCAAACAGAGAGGAGCCTGTGGACAGCCGGACGC
CCGTGACCGAGAGAGTTAGCTGACTTTGCGCAGAGCGGATGGCCAAGCAAACCAACAAGA
ATAAAGGCAGCTGTTGTCTCTTCTCCTTATGGGTAGGGCTCTGACAAAGCTTCCCGATTA
ACTGAAATAAAAAATATTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14149645|ref|NP_034918.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14149645|ref|NP_034918.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-240, + strand, RNAz p=0.737795
               

               
               620-739, - strand, RNAz p=0.685585

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.737795
               

               
               620-739, - strand, RNAz p=0.685585

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr7 (6412301-6411297)
               

               
               1-984, gnl|Hg17|chrX (152817548-152816544)
               

               
               1-984, gnl|Mm7|chrX (69422943-69421945)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr7 (6412301-6411297)
               

               
               1-984, gnl|Hg17|chrX (152817548-152816544)
               

               
               1-984, gnl|Mm7|chrX (69422943-69421945)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

	121-240, + strand, RNAz p=0.737795
	620-739, - strand, RNAz p=0.685585

	1-984, gnl\|bosTau2\|chr7 (6412301-6411297)
	1-984, gnl\|Hg17\|chrX (152817548-152816544)
	1-984, gnl\|Mm7\|chrX (69422943-69421945)

	fce (0.271592)
	fli (0.202881)
	nep (0.183925)
	ill (0.175593)
	che (0.136314)
	nmm (0.132802)
	cly (0.120642)