Ss1.1-Pig4-TMW8024L06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGAGTACTTCCATTTAGATATGATGAAACTTCGTAGATTTTTAGTTATGATTCAAGA AGATTACCACAGTCAAAACCCTTACCACAATGCAGTCCACGCTGCAGATGTGACTCAGGC CATGCACTGTTACTTAAAAGAACCTAAGCTTGCCAGTTGTGTAACTCCTTGGGACGTCTT GCTGAGCTTAATTGCAGCTGCCACTCATGATCTGGATCATCCAGGTGTTAATCAACCTTT CCTTATTAAAACTAACCATTACTTGGCAACTTTATACAAGAATACCTCAGTATTGGAAAA TCACCACTGGAGATCTGCGGTGGGATTATTGCGAGAATCGGGTTTATTCTCACATATGCC GTTAGAAAGCAGGCAGCAGATGGAGGCTCAGATAGGCGCTCTGATCCTGGCCACAGACAT CAGCCGCCAGAACGAGTATCTGTCCTTGTTTAGGGCCCATCTGGACAGAGGCGACTTATG CCTGGAAGACGCCAGGCATCGACACTTGGTCTTACAGATGGCTTTGAAATGCGCTGATAT CTGTAATCCCTGTCGGACCTGGGAATTAAGCAAGCAGTGGAGTGAAAAAGTAACGGAGGA ATTCTTCCATCAAGGAGATATAGAAAAAAAGTATCATTTGAGTGTGAGTCCGCTTTGTGA TCGTCAGACGGAATCTATTGCCAACATCCAGATTGGTTTTATGACTTACCTGGTGGAGCC TCTATTCACAGAATGGGCCCGGTTTTCTAATACCAGGCTGTCCCAGACGATGCTCGGACA CGTGGGGCTGAATAAAGCCAGCTGGAAGGGACTGCAGCGAGAACAGTCCAGCAGTGAGGA CACGGATGCTGCATTTGAGGAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGAGTACTTCCATTTAGATATGATGAAACTTCGTAGATTTTTAGTTATGATTCAAGA AGATTACCACAGTCAAAACCCTTACCACAATGCAGTCCACGCTGCAGATGTGACTCAGGC CATGCACTGTTACTTAAAAGAACCTAAGCTTGCCAGTTGTGTAACTCCTTGGGACGTCTT GCTGAGCTTAATTGCAGCTGCCACTCATGATCTGGATCATCCAGGTGTTAATCAACCTTT CCTTATTAAAACTAACCATTACTTGGCAACTTTATACAAGAATACCTCAGTATTGGAAAA TCACCACTGGAGATCTGCGGTGGGATTATTGCGAGAATCGGGTTTATTCTCACATATGCC GTTAGAAAGCAGGCAGCAGATGGAGGCTCAGATAGGCGCTCTGATCCTGGCCACAGACAT CAGCCGCCAGAACGAGTATCTGTCCTTGTTTAGGGCCCATCTGGACAGAGGCGACTTATG CCTGGAAGACGCCAGGCATCGACACTTGGTCTTACAGATGGCTTTGAAATGCGCTGATAT CTGTAATCCCTGTCGGACCTGGGAATTAAGCAAGCAGTGGAGTGAAAAAGTAACGGAGGA ATTCTTCCATCAAGGAGATATAGAAAAAAAGTATCATTTGAGTGTGAGTCCGCTTTGTGA TCGTCAGACGGAATCTATTGCCAACATCCAGATTGGTTTTATGACTTACCTGGTGGAGCC TCTATTCACAGAATGGGCCCGGTTTTCTAATACCAGGCTGTCCCAGACGATGCTCGGACA CGTGGGGCTGAATAAAGCCAGCTGGAAGGGACTGCAGCGAGAACAGTCCAGCAGTGAGGA CACGGATGCTGCATTTGAGGAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 370-488, + strand, RNAz p=0.912629 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 370-488, + strand, RNAz p=0.912629 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 147-280, gnl|bosTau2|chr18 (47863-47996) | |
| 147-280, gnl|Hg17|chr8 (66802092-66801959) | |
| 147-280, gnl|Mm7|chr3 (18965827-18965694) | |
| 370-517, gnl|bosTau2|chr18 (50644-50791) | |
| 370-517, gnl|canFam2|chr29 (18409871-18410032) | |
| 370-517, gnl|danRer3|chr24 (23718390-23718218) | |
| 370-517, gnl|dasNov1|scaffold_20305 (3535-3696) | |
| 370-517, gnl|echTel1|scaffold_283098 (33944-33786) | |
| 370-517, gnl|fr1|chrUn (87763575-87763414) | |
| 370-517, gnl|galGal2|chrUn (21932532-21932366) | |
| 370-517, gnl|hg17|chr8 (66799565-66799726) | |
| 370-517, gnl|Hg17|chr8 (66799713-66799566) | |
| 370-517, gnl|loxAfr1|scaffold_4445 (65853-66014) | |
| 370-517, gnl|mm7|chr3 (18962974-18963135) | |
| 370-517, gnl|Mm7|chr3 (18963122-18962975) | |
| 370-517, gnl|monDom2|scaffold_4 (96026483-96026322) | |
| 370-517, gnl|oryCun1|scaffold_187715 (114639-114478) | |
| 370-517, gnl|panTro1|chr7 (68799950-68800111) | |
| 370-517, gnl|rheMac2|chr8 (68345640-68345801) | |
| 370-517, gnl|rn3|chr2 (104289777-104289938) | |
| 370-517, gnl|tetNig1|chr14 (5876268-5876417) | |
| 370-517, gnl|xenTro1|scaffold_777 (314811-314969) | |
| 695-864, gnl|bosTau2|chr18 (56335-56504) | |
| 695-864, gnl|Hg17|chr8 (66794285-66794119) | |
| 695-864, gnl|Mm7|chr3 (18959860-18959694) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-280, gnl|bosTau2|chr18 (47863-47996) | |
| 147-280, gnl|Hg17|chr8 (66802092-66801959) | |
| 147-280, gnl|Mm7|chr3 (18965827-18965694) | |
| 370-517, gnl|bosTau2|chr18 (50644-50791) | |
| 370-517, gnl|canFam2|chr29 (18409871-18410032) | |
| 370-517, gnl|danRer3|chr24 (23718390-23718218) | |
| 370-517, gnl|dasNov1|scaffold_20305 (3535-3696) | |
| 370-517, gnl|echTel1|scaffold_283098 (33944-33786) | |
| 370-517, gnl|fr1|chrUn (87763575-87763414) | |
| 370-517, gnl|galGal2|chrUn (21932532-21932366) | |
| 370-517, gnl|hg17|chr8 (66799565-66799726) | |
| 370-517, gnl|Hg17|chr8 (66799713-66799566) | |
| 370-517, gnl|loxAfr1|scaffold_4445 (65853-66014) | |
| 370-517, gnl|mm7|chr3 (18962974-18963135) | |
| 370-517, gnl|Mm7|chr3 (18963122-18962975) | |
| 370-517, gnl|monDom2|scaffold_4 (96026483-96026322) | |
| 370-517, gnl|oryCun1|scaffold_187715 (114639-114478) | |
| 370-517, gnl|panTro1|chr7 (68799950-68800111) | |
| 370-517, gnl|rheMac2|chr8 (68345640-68345801) | |
| 370-517, gnl|rn3|chr2 (104289777-104289938) | |
| 370-517, gnl|tetNig1|chr14 (5876268-5876417) | |
| 370-517, gnl|xenTro1|scaffold_777 (314811-314969) | |
| 695-864, gnl|bosTau2|chr18 (56335-56504) | |
| 695-864, gnl|Hg17|chr8 (66794285-66794119) | |
| 695-864, gnl|Mm7|chr3 (18959860-18959694) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |