Non-Coding RNA Search

Ss1.1-Pig4-TMW8024L10.3

Sequence:


               
               ATTTATATATGAGGAAATTGCACATAGTACCAAGACTTGGGGGAATCCAGAAAATTTTTA
GACCGTGAATGTTTCCATTTTTTTCTAATGGAATGTGAGAGTTTATTTTTATTTTATTCT
GAAGGACTTTAAAGGAAGGGATTCATGATAAAAAGCCCGTAAAAGGTGAAATATGTGATG
TTTGAAGTCTCTTGGTAGACTTTTTATATATATTTTTAAAAAACACTCATCTAGATGAGG
TGCTTTGAGCAGTTCTGAAAAATGCAGTTCCAGAAAAGCAACTGCTTTGATTCCTAAGGA
AGAAATTCTAAATAATGCAAACTTTTTTTTATAAGCATCTGGGTTTTTGATAATTCTGTC
TATCTACAACAAACTGGTGAGTGCATAACCACTATTTTAATAATTATTTTCTCTACACAA
ATGTGTAATATTATATTTGACTTTGCTTATGCAGGCCATAAGTTCCAAAAAAGCAATTTC
CCCTGGCCACAAAGACATACATTTGAAAACACTTGTGATTGAATCAACATGCTTTAATAG
GAAAAGATGTATAATCTATGTATGTATCAAGTTTAGTGCATCCTTGTTCTAATAAGGATT
TTTCCCCCCCTTTTCTACGATGCACATAACCCCCCTGATAGGTATTTATGAACGTTTTCC
TTTTGCACCTCCAGATAGTATTCATTGTCTGAGGTGAATTAAATTACCACCAAGACTTGC
TGTCAGTATTTCAACACCTACTTCGGCATATAGACCCAGGGTAATATCCCACTAACATAA
CCTTATTAACCTGTCTTGGGATTCCGGCTGAGTGCTTGGATTTATATCCTTATTAACACT
ACATTGAAAAGTGGGACGTCTGCCATCCCAACTCTGGGAGAACCAACTTATATAAGACAA
ATGAAGGCCATCTTAATGGTCTCGACACTAATTTTTATGATACAAATTTATAAACTGATT
TTTGTAAAGGACTAGGTTTTAAAAGTGTATTTAACCTGATGTTTTCTATCAGCATAAATG
AATTAAAACGATCATTTATTAGTCATTAAACACAGTTGCCAGAGATAATCTGCATGAAGG
GAAAAACCCTGCCGATGGCTATGAAGTTGGAAGGTTTGTTTTGACTATGTAAGAAGTATT
CAGAATGCTCCCCCTGAGAAATGCCTCAACTTTTTTAAGGAGAAGAAACCACCATGAGTG
GCATTTAGATTTCTAATGAAGAATGATGAGACAGTTTGGATTAAGTATCTTGGACTGGTT
TTATACAGTGCTTTTGTACTGGATCTGCCGAAGCATCTGTCCAGCTTGGTATCCTGTGAA
AAGTTTGTTATTTTCTGGGTAGACATTCTTATAGAGTATTGTCTTTAAAATAAGATTGTC
TCTTCTATATTGAAAGCATTTTTATGTTTTCTAATTTAAAAATTAATATTTTCTTATAGA
TATTGTGCAATAAAGCTGAAGTAGGATGTGTGGTTTTGCAAATGCTTTAACAGCAGATAA
AATTTTACATTTGTAAAATTAATATATTGTACTGGTACAAAATAGTTTTAAATTATATTT
TAAAAAGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATATATGAGGAAATTGCACATAGTACCAAGACTTGGGGGAATCCAGAAAATTTTTA
GACCGTGAATGTTTCCATTTTTTTCTAATGGAATGTGAGAGTTTATTTTTATTTTATTCT
GAAGGACTTTAAAGGAAGGGATTCATGATAAAAAGCCCGTAAAAGGTGAAATATGTGATG
TTTGAAGTCTCTTGGTAGACTTTTTATATATATTTTTAAAAAACACTCATCTAGATGAGG
TGCTTTGAGCAGTTCTGAAAAATGCAGTTCCAGAAAAGCAACTGCTTTGATTCCTAAGGA
AGAAATTCTAAATAATGCAAACTTTTTTTTATAAGCATCTGGGTTTTTGATAATTCTGTC
TATCTACAACAAACTGGTGAGTGCATAACCACTATTTTAATAATTATTTTCTCTACACAA
ATGTGTAATATTATATTTGACTTTGCTTATGCAGGCCATAAGTTCCAAAAAAGCAATTTC
CCCTGGCCACAAAGACATACATTTGAAAACACTTGTGATTGAATCAACATGCTTTAATAG
GAAAAGATGTATAATCTATGTATGTATCAAGTTTAGTGCATCCTTGTTCTAATAAGGATT
TTTCCCCCCCTTTTCTACGATGCACATAACCCCCCTGATAGGTATTTATGAACGTTTTCC
TTTTGCACCTCCAGATAGTATTCATTGTCTGAGGTGAATTAAATTACCACCAAGACTTGC
TGTCAGTATTTCAACACCTACTTCGGCATATAGACCCAGGGTAATATCCCACTAACATAA
CCTTATTAACCTGTCTTGGGATTCCGGCTGAGTGCTTGGATTTATATCCTTATTAACACT
ACATTGAAAAGTGGGACGTCTGCCATCCCAACTCTGGGAGAACCAACTTATATAAGACAA
ATGAAGGCCATCTTAATGGTCTCGACACTAATTTTTATGATACAAATTTATAAACTGATT
TTTGTAAAGGACTAGGTTTTAAAAGTGTATTTAACCTGATGTTTTCTATCAGCATAAATG
AATTAAAACGATCATTTATTAGTCATTAAACACAGTTGCCAGAGATAATCTGCATGAAGG
GAAAAACCCTGCCGATGGCTATGAAGTTGGAAGGTTTGTTTTGACTATGTAAGAAGTATT
CAGAATGCTCCCCCTGAGAAATGCCTCAACTTTTTTAAGGAGAAGAAACCACCATGAGTG
GCATTTAGATTTCTAATGAAGAATGATGAGACAGTTTGGATTAAGTATCTTGGACTGGTT
TTATACAGTGCTTTTGTACTGGATCTGCCGAAGCATCTGTCCAGCTTGGTATCCTGTGAA
AAGTTTGTTATTTTCTGGGTAGACATTCTTATAGAGTATTGTCTTTAAAATAAGATTGTC
TCTTCTATATTGAAAGCATTTTTATGTTTTCTAATTTAAAAATTAATATTTTCTTATAGA
TATTGTGCAATAAAGCTGAAGTAGGATGTGTGGTTTTGCAAATGCTTTAACAGCAGATAA
AATTTTACATTTGTAAAATTAATATATTGTACTGGTACAAAATAGTTTTAAATTATATTT
TAAAAAGCTCTC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1406-1572, gnl|bosTau2|chr12 (26006654-26006486)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1406-1572, gnl|bosTau2|chr12 (26006654-26006486)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               sag (0.913576)
               

               
               ski (0.586941)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.913576)
               

               
               ski (0.586941)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	sag (0.913576)
	ski (0.586941)
	ret (0.514933)
	sug (0.509165)
	tbr (0.462535)
	isp (0.451128)
	bfe (0.449573)
	liv (0.438853)
	ste (0.405625)
	lyg (0.399308)
	tra (0.369276)
	vin (0.332557)
	fco (0.314416)
	sme (0.305437)
	ldo (0.291008)
	ova (0.258264)
	thg (0.253582)
	cbe (0.239234)
	spc (0.226732)
	fhi (0.169578)
	mga (0.160205)
	fat (0.147427)
	spl (0.143184)
	ssp (0.13552)
	kid (0.129735)
	med (0.116252)
	cty (0.10408)