Ss1.1-Pig4-TMW8024L11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGAAACGGGTTTCTCACAGG ATTCTTCTTTGCAGCAAGCCTTTTCTGATTATCAGATGCAACAAATGACGTCCAATTTTA TTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGATGACATTGGCAATGTTT CTTTTGATCGAGTATCAGACATCAACTTCACTCTCAATACGAATGAAAGTGGGAACATTG CCTTGTTTGAAGCTTGCTGTAAGGAACGAATACAGCAGTTTGACGATGGGGGCTCTGACG AGGAGGACATCTGGGAGGAAAAGCACGTCGCCTTCACGCCGGAGTCCCAGAGGCGATCCA GCTCGGGGAGCACAGACAGTGAGGAGAGCACGGACTCTGAAGAAGAAGATGGAGCAAAGC CGGACTTGTTTGAACCCAGTGGCGCCAACGCGGAGGACAAGATGGAGGTGGACTTGAATG AGCCGCCCAGCTGGTCAGCCAACTTTGACGTCCCCATGGAGACCGCCCACGGTGCTGCCT TGGACTCCGTGGGGTCTGACGTCTGGAGCACAGAGGAGTCAGTGCCAACGAAGGAGACAG GCTGGGCCTCCTTTTCAGAGTTCACGTCCTCCCTGAGTACAAAAGATTCTCTAAGGAGTA ATTCTCCAGTGGAAATGGAAACCAGCACTGAGCCGATGGACCCTCTGACTCCCAGTGTCG CCGCGCTGGCTGTGCAGCCGGAAGTGCCAGGCAGTGTGGCCATGGAAGCCAGCTCTGACG GGGAGGAGGATGCAGAAAGTACAGACAAGGTAACTGAGACAGTGATGAATGGCGGCATGA AGGAAACCCTCAGCCTCACTGTAGACGCCAAGACAGAAACCGCGGTCTTCAAAAGGTAAC CGGGGCCTACGTCGTACTGGCAGCTTCCTTATCGGGAGGGCGAGGGGGAGCGCAGGTGGG ATCGTCTTCCGTTTGATTCAGACCTGGGTTCAGACGTCAGCCTGACCTCTTTCTAGTGCC TGTGTTAAATTCATTAAATCCTAATGAAGACCTGGCGTTTGGGTCTCTGAATTTCTCGTC CCTCCTCTTCTGTAGTGTTCAGAAGACTGTAGTTGAAGTCTCATGGACTCAGAATACACG AGCGTAGCAAGTGGACGAATCTCTAATCACAACGCGAGTTCATTGTGTACGGGCTACAAG GCCTGGACCATCCAGATCGATTTCTGTACGCAACCAGTAGAATCCGGGAGCAAAATGATA AATAGCCTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGAAACGGGTTTCTCACAGG ATTCTTCTTTGCAGCAAGCCTTTTCTGATTATCAGATGCAACAAATGACGTCCAATTTTA TTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGATGACATTGGCAATGTTT CTTTTGATCGAGTATCAGACATCAACTTCACTCTCAATACGAATGAAAGTGGGAACATTG CCTTGTTTGAAGCTTGCTGTAAGGAACGAATACAGCAGTTTGACGATGGGGGCTCTGACG AGGAGGACATCTGGGAGGAAAAGCACGTCGCCTTCACGCCGGAGTCCCAGAGGCGATCCA GCTCGGGGAGCACAGACAGTGAGGAGAGCACGGACTCTGAAGAAGAAGATGGAGCAAAGC CGGACTTGTTTGAACCCAGTGGCGCCAACGCGGAGGACAAGATGGAGGTGGACTTGAATG AGCCGCCCAGCTGGTCAGCCAACTTTGACGTCCCCATGGAGACCGCCCACGGTGCTGCCT TGGACTCCGTGGGGTCTGACGTCTGGAGCACAGAGGAGTCAGTGCCAACGAAGGAGACAG GCTGGGCCTCCTTTTCAGAGTTCACGTCCTCCCTGAGTACAAAAGATTCTCTAAGGAGTA ATTCTCCAGTGGAAATGGAAACCAGCACTGAGCCGATGGACCCTCTGACTCCCAGTGTCG CCGCGCTGGCTGTGCAGCCGGAAGTGCCAGGCAGTGTGGCCATGGAAGCCAGCTCTGACG GGGAGGAGGATGCAGAAAGTACAGACAAGGTAACTGAGACAGTGATGAATGGCGGCATGA AGGAAACCCTCAGCCTCACTGTAGACGCCAAGACAGAAACCGCGGTCTTCAAAAGGTAAC CGGGGCCTACGTCGTACTGGCAGCTTCCTTATCGGGAGGGCGAGGGGGAGCGCAGGTGGG ATCGTCTTCCGTTTGATTCAGACCTGGGTTCAGACGTCAGCCTGACCTCTTTCTAGTGCC TGTGTTAAATTCATTAAATCCTAATGAAGACCTGGCGTTTGGGTCTCTGAATTTCTCGTC CCTCCTCTTCTGTAGTGTTCAGAAGACTGTAGTTGAAGTCTCATGGACTCAGAATACACG AGCGTAGCAAGTGGACGAATCTCTAATCACAACGCGAGTTCATTGTGTACGGGCTACAAG GCCTGGACCATCCAGATCGATTTCTGTACGCAACCAGTAGAATCCGGGAGCAAAATGATA AATAGCCTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 75-175, gnl|bosTau2|chr29 (42024870-42024770) | |
| 75-175, gnl|Hg17|chr11 (68111968-68112068) | |
| 75-175, gnl|Mm7|chr19 (3368675-3368575) | |
| 360-477, gnl|bosTau2|chr29 (42016136-42016019) | |
| 360-477, gnl|canFam2|chr18 (52329220-52329076) | |
| 360-477, gnl|danRer3|chr7 (4018373-4018244) | |
| 360-477, gnl|dasNov1|scaffold_853 (42511-42357) | |
| 360-477, gnl|echTel1|scaffold_236993 (5521-5399) | |
| 360-477, gnl|fr1|chrUn (254928095-254927979) | |
| 360-477, gnl|galGal2|chr5 (13889736-13889881) | |
| 360-477, gnl|hg17|chr11 (68120140-68120294) | |
| 360-477, gnl|Hg17|chr11 (68120139-68120256) | |
| 360-477, gnl|loxAfr1|scaffold_113223 (1564-1694) | |
| 360-477, gnl|mm7|chr19 (3364571-3364417) | |
| 360-477, gnl|Mm7|chr19 (3364570-3364453) | |
| 360-477, gnl|monDom2|scaffold_226 (58249-58097) | |
| 360-477, gnl|oryCun1|scaffold_124548 (1139-1282) | |
| 360-477, gnl|panTro1|chr9 (69169133-69169287) | |
| 360-477, gnl|rheMac2|chr14 (6126462-6126308) | |
| 360-477, gnl|rn3|chr1 (206149158-206149004) | |
| 360-477, gnl|tetNig1|chrUn_random (17994929-17995045) | |
| 360-477, gnl|xenTro1|scaffold_1442 (84409-84538) | |
| 486-637, gnl|bosTau2|chr29 (42011740-42011589) | |
| 486-637, gnl|Hg17|chr11 (68124387-68124538) | |
| 486-637, gnl|Mm7|chr19 (3362098-3361947) | |
| 743-1212, gnl|bosTau2|chr29 (42008632-42008156) | |
| 743-1212, gnl|Hg17|chr11 (68127384-68127854) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-175, gnl|bosTau2|chr29 (42024870-42024770) | |
| 75-175, gnl|Hg17|chr11 (68111968-68112068) | |
| 75-175, gnl|Mm7|chr19 (3368675-3368575) | |
| 360-477, gnl|bosTau2|chr29 (42016136-42016019) | |
| 360-477, gnl|canFam2|chr18 (52329220-52329076) | |
| 360-477, gnl|danRer3|chr7 (4018373-4018244) | |
| 360-477, gnl|dasNov1|scaffold_853 (42511-42357) | |
| 360-477, gnl|echTel1|scaffold_236993 (5521-5399) | |
| 360-477, gnl|fr1|chrUn (254928095-254927979) | |
| 360-477, gnl|galGal2|chr5 (13889736-13889881) | |
| 360-477, gnl|hg17|chr11 (68120140-68120294) | |
| 360-477, gnl|Hg17|chr11 (68120139-68120256) | |
| 360-477, gnl|loxAfr1|scaffold_113223 (1564-1694) | |
| 360-477, gnl|mm7|chr19 (3364571-3364417) | |
| 360-477, gnl|Mm7|chr19 (3364570-3364453) | |
| 360-477, gnl|monDom2|scaffold_226 (58249-58097) | |
| 360-477, gnl|oryCun1|scaffold_124548 (1139-1282) | |
| 360-477, gnl|panTro1|chr9 (69169133-69169287) | |
| 360-477, gnl|rheMac2|chr14 (6126462-6126308) | |
| 360-477, gnl|rn3|chr1 (206149158-206149004) | |
| 360-477, gnl|tetNig1|chrUn_random (17994929-17995045) | |
| 360-477, gnl|xenTro1|scaffold_1442 (84409-84538) | |
| 486-637, gnl|bosTau2|chr29 (42011740-42011589) | |
| 486-637, gnl|Hg17|chr11 (68124387-68124538) | |
| 486-637, gnl|Mm7|chr19 (3362098-3361947) | |
| 743-1212, gnl|bosTau2|chr29 (42008632-42008156) | |
| 743-1212, gnl|Hg17|chr11 (68127384-68127854) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |