Ss1.1-Pig4-TMW8024L14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGACAGACAGTGGCGCTCAAAGCTCCCTCTTCCCTACAGGGGAGAAGCCATACGCCT GCACGTGGGATGGCTGTGGCTGGAGGTTCGCGCGCTCTGATGAGCTGACCCGTCACTACC GAAAACACACCGGACAGCGCCCCTTCCGCTGCCAGCTCTGCCCGCGAGCTTTTTCCCGCT CCGATCACCTGGCCTTGCATATGAAGCGTCATCTTTGAGCCCAGCGCTGGCACTTGGACC TTCCCCAGGGACTGGGGTTGGAACCCGAATGGATCCACACAGGGTGGTTTTCCCTCAGAT GAACCCTTGTCAGGACTCTTGGCCCCACAGATCCACCATAAGATCAAGGACTGGCCCATA GAGAGACCTGAGGGAGCCTCCAGTGAAAGCTCCCACATGTCCTTGACCACAGGGAGCCAC ACAGTGACACACAGTCACATAGACCCGGCAAGATAGACCTCCAAATAAATGGACTCGGGT GGACACTTAAACACTTCTGACAAAGAGACAGACCCTCAGAGAGCTGGACCATCAGACCAG TTCATAGGTGGCCCTAGAAAGCTGAAGGGGTTGTGGGATGAGGCTTGTCAGAGACCCTGG TTCTAGAAGACTTCACACTGTGACTCCTGAAGCTCCACATAGTGGCTGGCATCTGCTGTG AATGGTTATGGGTCCTGTAAAAATGCCCCTCCCAGATAAAGCTTCAGTGTTTGTCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGACAGACAGTGGCGCTCAAAGCTCCCTCTTCCCTACAGGGGAGAAGCCATACGCCT GCACGTGGGATGGCTGTGGCTGGAGGTTCGCGCGCTCTGATGAGCTGACCCGTCACTACC GAAAACACACCGGACAGCGCCCCTTCCGCTGCCAGCTCTGCCCGCGAGCTTTTTCCCGCT CCGATCACCTGGCCTTGCATATGAAGCGTCATCTTTGAGCCCAGCGCTGGCACTTGGACC TTCCCCAGGGACTGGGGTTGGAACCCGAATGGATCCACACAGGGTGGTTTTCCCTCAGAT GAACCCTTGTCAGGACTCTTGGCCCCACAGATCCACCATAAGATCAAGGACTGGCCCATA GAGAGACCTGAGGGAGCCTCCAGTGAAAGCTCCCACATGTCCTTGACCACAGGGAGCCAC ACAGTGACACACAGTCACATAGACCCGGCAAGATAGACCTCCAAATAAATGGACTCGGGT GGACACTTAAACACTTCTGACAAAGAGACAGACCCTCAGAGAGCTGGACCATCAGACCAG TTCATAGGTGGCCCTAGAAAGCTGAAGGGGTTGTGGGATGAGGCTTGTCAGAGACCCTGG TTCTAGAAGACTTCACACTGTGACTCCTGAAGCTCCACATAGTGGCTGGCATCTGCTGTG AATGGTTATGGGTCCTGTAAAAATGCCCCTCCCAGATAAAGCTTCAGTGTTTGTCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 294-493, - strand, RNAz p=0.973349 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 294-493, - strand, RNAz p=0.973349 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 9-704, gnl|bosTau2|chr7 (8544723-8544050) | |
| 9-704, gnl|Hg17|chr19 (12856907-12856232) | |
| 9-704, gnl|Mm7|chr8 (83490842-83491404) | |
| 27-199, gnl|bosTau2|chr12 (24415725-24415899) | |
| 27-199, gnl|canFam2|chr22 (30652063-30652280) | |
| 27-199, gnl|danRer3|chr11 (26968975-26969203) | |
| 27-199, gnl|dasNov1|scaffold_503 (118776-118994) | |
| 27-199, gnl|echTel1|scaffold_249317 (3855-4072) | |
| 27-199, gnl|fr1|chrUn (148820680-148820889) | |
| 27-199, gnl|galGal2|chr1 (152533014-152532804) | |
| 27-199, gnl|hg17|chr13 (73167618-73167837) | |
| 27-199, gnl|Hg17|chr13 (73167827-73167653) | |
| 27-199, gnl|loxAfr1|scaffold_1620 (97620-97402) | |
| 27-199, gnl|mm7|chr14 (94278735-94278953) | |
| 27-199, gnl|Mm7|chr14 (94278943-94278769) | |
| 27-199, gnl|monDom2|scaffold_8 (10166624-10166834) | |
| 27-199, gnl|oryCun1|scaffold_213608 (254352-254144) | |
| 27-199, gnl|panTro1|chr14 (55716930-55717147) | |
| 27-199, gnl|rheMac2|chr17 (54147153-54147372) | |
| 27-199, gnl|rn3|chr15 (83703111-83703329) | |
| 27-199, gnl|tetNig1|chr2 (8027417-8027632) | |
| 27-199, gnl|xenTro1|scaffold_107 (583178-582969) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-704, gnl|bosTau2|chr7 (8544723-8544050) | |
| 9-704, gnl|Hg17|chr19 (12856907-12856232) | |
| 9-704, gnl|Mm7|chr8 (83490842-83491404) | |
| 27-199, gnl|bosTau2|chr12 (24415725-24415899) | |
| 27-199, gnl|canFam2|chr22 (30652063-30652280) | |
| 27-199, gnl|danRer3|chr11 (26968975-26969203) | |
| 27-199, gnl|dasNov1|scaffold_503 (118776-118994) | |
| 27-199, gnl|echTel1|scaffold_249317 (3855-4072) | |
| 27-199, gnl|fr1|chrUn (148820680-148820889) | |
| 27-199, gnl|galGal2|chr1 (152533014-152532804) | |
| 27-199, gnl|hg17|chr13 (73167618-73167837) | |
| 27-199, gnl|Hg17|chr13 (73167827-73167653) | |
| 27-199, gnl|loxAfr1|scaffold_1620 (97620-97402) | |
| 27-199, gnl|mm7|chr14 (94278735-94278953) | |
| 27-199, gnl|Mm7|chr14 (94278943-94278769) | |
| 27-199, gnl|monDom2|scaffold_8 (10166624-10166834) | |
| 27-199, gnl|oryCun1|scaffold_213608 (254352-254144) | |
| 27-199, gnl|panTro1|chr14 (55716930-55717147) | |
| 27-199, gnl|rheMac2|chr17 (54147153-54147372) | |
| 27-199, gnl|rn3|chr15 (83703111-83703329) | |
| 27-199, gnl|tetNig1|chr2 (8027417-8027632) | |
| 27-199, gnl|xenTro1|scaffold_107 (583178-582969) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) |