Ss1.1-Pig4-TMW8024L24.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATTGGGGTGGAAGCCTGAGCTGAACCAAGCTCCTGAGAGGAAGAGAAAAGAAAGGAAG AAACACTAGAAAGAAAAAGGAAGGAAAACGGGATAGAGGGAGAGCAACCGCCCACCCTTA AAGAGCTAGGCTGGGGGGGAGGGGGAAAGCTTAGACCGCACCGAGGAGCTCTTTATCTGA GACTGCTCTGAAGTGTTCATCTTCTGTGCCATTCGGTTTATGGAGAAGAAGAAAATGGTA ACTCAGGGTAACCAGGAGCCAACAGCAACTCCTGATGCAATGGTTCAGCCTTTTACTACA ATCCCGTTTCCGCCACCTCCACAGAATGGAATTCCCGCCGAGTATGGAGTGCCACACACT CAGGACTATGCCGGCCAGACCAGTGAGCATAACCTGACCCTCTACGGCAGCACGCAAGCC CATGGGGAGCAGAGTAGCAACTCCCCCAGCACACAGAACGGATCTCTGACGACAGAAGGG GGCGCACAGACAGACGGCCAGCAGTCACAGACACAAAGCAGTGAAAATTCAGAGAGTAAA TCTACCCCGAAACGACTGCATGTCTCTAATATTCCTTTCCGCTTCCGGGACCCTGACCTC CGGCAGATGTTTGGGCAGTTTGGCAAAATCCTAGATGTAGAAATAATCTTTAATGAACGT GGCTCTAAGGGATTCGGGTTCGTAACTTTCGAGAATAGTGCTGATGCAGACAGGGCCAGG GAGAAATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAACGCCACGGCA CGTGTAATGACCAATAAGAAGATGGTCACACCGTATGCAAATGGTTGGAAATTAAGCCCA GTCGTTGGAGCTGTATATGGTCCCGAGTTGTATGCAGCATCCAGCTTTCAGGCAGATGTG TCACTAGGCAATGACGCAGCCGTGCCCCTATCAGGAAGAGGGGGCATCAACACTTACATT CCTTTAATCAGTCTCCCTTTAGTTCCTGGCTTCCCTTACCCAACTGCAGCCACCACGGCG GCCGCTTTCAGAGGAGCCCACCTGAGGGGCAGAGGGCGGACGGTATACGGTGCGGTCCGA GCGGTACCTCCAACAGCCATTCCCGCCTATCCAGGTGTGGTTTACCAGGACGGATTTTAC GGTGCTGACCTCTATGGTGGATATGCAGCCTACAGATATGCACAGCCTGCTACTGCAACC GCAGCCACCGCTGCTGCAGCCGCCGCCGCCGCTTACAGCGACGGTTATGGCAGGGTGTAC ACAGCCGACCCCTACCATGCCCTCGCCCCTGCCGCTAGCTATGGAGTTGGCGCTGTGGCG AGTTTATACCGAGGTGGCTACAGCCGATTTGCCCCCTACTGAAGTGACGTGAGACCCCTG CAAATGGGACAGCCCCCCAGTTCATGAGGCCTGGCTATTGCAATATTTACTAGTAGAGGA ACTCTATAGCAAGATGAAGAGGAAAAACAAACAAACAAACAAACAAAAAAAAAAAACAAA AAAAGAGAGAATACTTTTTTATACCTCACTATGTTCTTTGAATATGTATTTTTCCTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATTGGGGTGGAAGCCTGAGCTGAACCAAGCTCCTGAGAGGAAGAGAAAAGAAAGGAAG AAACACTAGAAAGAAAAAGGAAGGAAAACGGGATAGAGGGAGAGCAACCGCCCACCCTTA AAGAGCTAGGCTGGGGGGGAGGGGGAAAGCTTAGACCGCACCGAGGAGCTCTTTATCTGA GACTGCTCTGAAGTGTTCATCTTCTGTGCCATTCGGTTTATGGAGAAGAAGAAAATGGTA ACTCAGGGTAACCAGGAGCCAACAGCAACTCCTGATGCAATGGTTCAGCCTTTTACTACA ATCCCGTTTCCGCCACCTCCACAGAATGGAATTCCCGCCGAGTATGGAGTGCCACACACT CAGGACTATGCCGGCCAGACCAGTGAGCATAACCTGACCCTCTACGGCAGCACGCAAGCC CATGGGGAGCAGAGTAGCAACTCCCCCAGCACACAGAACGGATCTCTGACGACAGAAGGG GGCGCACAGACAGACGGCCAGCAGTCACAGACACAAAGCAGTGAAAATTCAGAGAGTAAA TCTACCCCGAAACGACTGCATGTCTCTAATATTCCTTTCCGCTTCCGGGACCCTGACCTC CGGCAGATGTTTGGGCAGTTTGGCAAAATCCTAGATGTAGAAATAATCTTTAATGAACGT GGCTCTAAGGGATTCGGGTTCGTAACTTTCGAGAATAGTGCTGATGCAGACAGGGCCAGG GAGAAATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTGAATAACGCCACGGCA CGTGTAATGACCAATAAGAAGATGGTCACACCGTATGCAAATGGTTGGAAATTAAGCCCA GTCGTTGGAGCTGTATATGGTCCCGAGTTGTATGCAGCATCCAGCTTTCAGGCAGATGTG TCACTAGGCAATGACGCAGCCGTGCCCCTATCAGGAAGAGGGGGCATCAACACTTACATT CCTTTAATCAGTCTCCCTTTAGTTCCTGGCTTCCCTTACCCAACTGCAGCCACCACGGCG GCCGCTTTCAGAGGAGCCCACCTGAGGGGCAGAGGGCGGACGGTATACGGTGCGGTCCGA GCGGTACCTCCAACAGCCATTCCCGCCTATCCAGGTGTGGTTTACCAGGACGGATTTTAC GGTGCTGACCTCTATGGTGGATATGCAGCCTACAGATATGCACAGCCTGCTACTGCAACC GCAGCCACCGCTGCTGCAGCCGCCGCCGCCGCTTACAGCGACGGTTATGGCAGGGTGTAC ACAGCCGACCCCTACCATGCCCTCGCCCCTGCCGCTAGCTATGGAGTTGGCGCTGTGGCG AGTTTATACCGAGGTGGCTACAGCCGATTTGCCCCCTACTGAAGTGACGTGAGACCCCTG CAAATGGGACAGCCCCCCAGTTCATGAGGCCTGGCTATTGCAATATTTACTAGTAGAGGA ACTCTATAGCAAGATGAAGAGGAAAAACAAACAAACAAACAAACAAAAAAAAAAAACAAA AAAAGAGAGAATACTTTTTTATACCTCACTATGTTCTTTGAATATGTATTTTTCCTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 244-1293, + strand, RNAz p=0.985589 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 244-1293, + strand, RNAz p=0.985589 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 244-471, gnl|bosTau2|chr5 (44221570-44221343) | |
| 244-471, gnl|Hg17|chr22 (34530554-34530327) | |
| 244-471, gnl|Mm7|chr15 (77215896-77215669) | |
| 668-768, gnl|bosTau2|chr25 (6078481-6078581) | |
| 668-768, gnl|canFam2|chr6 (37373067-37372849) | |
| 668-768, gnl|danRer3|chr3 (19454703-19454964) | |
| 668-768, gnl|dasNov1|scaffold_117 (57929-57711) | |
| 668-768, gnl|echTel1|scaffold_284986 (8763-8543) | |
| 668-768, gnl|fr1|chrUn (223393473-223393685) | |
| 668-768, gnl|galGal2|chr14 (13196335-13196114) | |
| 668-768, gnl|hg17|chr16 (7585507-7585725) | |
| 668-768, gnl|Hg17|chr16 (7585550-7585650) | |
| 668-768, gnl|loxAfr1|scaffold_17235 (14138-14359) | |
| 668-768, gnl|mm7|chr16 (6965383-6965608) | |
| 668-768, gnl|Mm7|chr16 (6965425-6965525) | |
| 668-768, gnl|monDom2|scaffold_17 (39354814-39354593) | |
| 668-768, gnl|oryCun1|scaffold_210611 (148201-147983) | |
| 668-768, gnl|panTro1|chr18 (7708960-7709179) | |
| 668-768, gnl|rheMac2|chr20 (7773895-7774113) | |
| 668-768, gnl|rn3|chr10 (8331405-8331186) | |
| 668-768, gnl|tetNig1|chr3 (14243737-14243556) | |
| 668-768, gnl|xenTro1|scaffold_253 (331952-332167) | |
| 971-1115, gnl|bosTau2|chr5 (44176078-44175934) | |
| 971-1115, gnl|Hg17|chr22 (34480579-34480435) | |
| 971-1115, gnl|Mm7|chr15 (77181036-77180892) | |
| 1149-1293, gnl|bosTau2|chr5 (44162862-44162718) | |
| 1149-1293, gnl|Hg17|chr22 (34467115-34466949) | |
| 1149-1293, gnl|Mm7|chr15 (77169114-77168960) | |
| 1317-1560, gnl|bosTau2|chr5 (44160698-44160459) | |
| 1317-1560, gnl|Hg17|chr22 (34464797-34464559) | |
| 1317-1560, gnl|Mm7|chr15 (77167159-77166944) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 244-471, gnl|bosTau2|chr5 (44221570-44221343) | |
| 244-471, gnl|Hg17|chr22 (34530554-34530327) | |
| 244-471, gnl|Mm7|chr15 (77215896-77215669) | |
| 668-768, gnl|bosTau2|chr25 (6078481-6078581) | |
| 668-768, gnl|canFam2|chr6 (37373067-37372849) | |
| 668-768, gnl|danRer3|chr3 (19454703-19454964) | |
| 668-768, gnl|dasNov1|scaffold_117 (57929-57711) | |
| 668-768, gnl|echTel1|scaffold_284986 (8763-8543) | |
| 668-768, gnl|fr1|chrUn (223393473-223393685) | |
| 668-768, gnl|galGal2|chr14 (13196335-13196114) | |
| 668-768, gnl|hg17|chr16 (7585507-7585725) | |
| 668-768, gnl|Hg17|chr16 (7585550-7585650) | |
| 668-768, gnl|loxAfr1|scaffold_17235 (14138-14359) | |
| 668-768, gnl|mm7|chr16 (6965383-6965608) | |
| 668-768, gnl|Mm7|chr16 (6965425-6965525) | |
| 668-768, gnl|monDom2|scaffold_17 (39354814-39354593) | |
| 668-768, gnl|oryCun1|scaffold_210611 (148201-147983) | |
| 668-768, gnl|panTro1|chr18 (7708960-7709179) | |
| 668-768, gnl|rheMac2|chr20 (7773895-7774113) | |
| 668-768, gnl|rn3|chr10 (8331405-8331186) | |
| 668-768, gnl|tetNig1|chr3 (14243737-14243556) | |
| 668-768, gnl|xenTro1|scaffold_253 (331952-332167) | |
| 971-1115, gnl|bosTau2|chr5 (44176078-44175934) | |
| 971-1115, gnl|Hg17|chr22 (34480579-34480435) | |
| 971-1115, gnl|Mm7|chr15 (77181036-77180892) | |
| 1149-1293, gnl|bosTau2|chr5 (44162862-44162718) | |
| 1149-1293, gnl|Hg17|chr22 (34467115-34466949) | |
| 1149-1293, gnl|Mm7|chr15 (77169114-77168960) | |
| 1317-1560, gnl|bosTau2|chr5 (44160698-44160459) | |
| 1317-1560, gnl|Hg17|chr22 (34464797-34464559) | |
| 1317-1560, gnl|Mm7|chr15 (77167159-77166944) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| pla (0.267344) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| nco (0.161734) | |
| ova (0.129132) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| nco (0.161734) | |
| ova (0.129132) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |