Non-Coding RNA Search

Ss1.1-Pig4-TMW8024M17.3

Sequence:


               
               GACCAGTTCGCCAAGCGTATTCAGGCCAAGAAGGAACGGGTAGCCAAGAACGAGCTGAAC
CGGCTGCGTAACCTGGCCCGCGCGCACAAGATGCAGCTGCCCAGCGCGGCCGGCATGCAC
CCTACCGGACATCAGAGTAAGGAAGAGCTGGGCCGCGCCATGCAGGTGGCCAAGGTCTCC
ACCGCCTCTGTAGGGCGCTTCCAGGAGCGCCTGCCCAAGGAGAAGGCGCCCCGGGGCTCT
GGCAAGAAAAGGAAGTTTCAACCCCTTTTTGGGGACTTTGCAGCTGAGAAGAAGAGCCAG
TTGGAGATGTTGCGAGTAATGAACAGCAAAAAGCCTCAGCTGGACGTGACCAGAGCCACC
AATAAGCAGATGAGGGAGGAGGACCAGGAAGAAGCGGCTAAGAGGAGGAAAATGAGCCAG
AAGGGCAAAAGAAAGGGAGGCCGACAGGGTCCTGGGGGTAAGAGGAAAGGTGGCCCACCC
AGCCAGGGAGGGAAGAGGAAAGGGGGCGTGGGAAGCAAGATGAATTCCGGGCCGCCGGGC
TTGGGTGGCAAGAGAAAAGGAGGGCAACACCAAGGAGGAAAGAGGAGGAAGTAAATTTCA
GCCTCGGACTTGTTTGTAAACCAAGAACTGTACTTAATGTTGACATCTAGGCACTGTAGG
GGGACACCAAAGATGTGGCCCCTGCCTTCACTGAGCTTGAAGTTAAAGGGACAGCCTTGC
CCTCCTCTGAAAATAGTATGTAAATATTGCACAGGACAAATTAATGTTATTTCCCACAAC
CAAAACTTTGGCTGAAGATTAAAGGATGTATTTAAGGCTATACGAATTAGGGAAAGAATT
TGGTCGAAATTAGGAGTGAGTTCTGTTTTTAAACAGACTTTTTTTTTCCTTGTAAACTTT
GTATGTGGTGTGAGGGAGGTCATATTTCAAAGACTTTTAGCATTGTTTTGATAACAAGCT
TCTGTATTTATCAAAGTGGGGGAACAAAAAGATTACAAGGTTACATTTTCAGAACTGTTG
TAAAGGCCATTTAATAAAGGTATGTCTGGATCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCAGTTCGCCAAGCGTATTCAGGCCAAGAAGGAACGGGTAGCCAAGAACGAGCTGAAC
CGGCTGCGTAACCTGGCCCGCGCGCACAAGATGCAGCTGCCCAGCGCGGCCGGCATGCAC
CCTACCGGACATCAGAGTAAGGAAGAGCTGGGCCGCGCCATGCAGGTGGCCAAGGTCTCC
ACCGCCTCTGTAGGGCGCTTCCAGGAGCGCCTGCCCAAGGAGAAGGCGCCCCGGGGCTCT
GGCAAGAAAAGGAAGTTTCAACCCCTTTTTGGGGACTTTGCAGCTGAGAAGAAGAGCCAG
TTGGAGATGTTGCGAGTAATGAACAGCAAAAAGCCTCAGCTGGACGTGACCAGAGCCACC
AATAAGCAGATGAGGGAGGAGGACCAGGAAGAAGCGGCTAAGAGGAGGAAAATGAGCCAG
AAGGGCAAAAGAAAGGGAGGCCGACAGGGTCCTGGGGGTAAGAGGAAAGGTGGCCCACCC
AGCCAGGGAGGGAAGAGGAAAGGGGGCGTGGGAAGCAAGATGAATTCCGGGCCGCCGGGC
TTGGGTGGCAAGAGAAAAGGAGGGCAACACCAAGGAGGAAAGAGGAGGAAGTAAATTTCA
GCCTCGGACTTGTTTGTAAACCAAGAACTGTACTTAATGTTGACATCTAGGCACTGTAGG
GGGACACCAAAGATGTGGCCCCTGCCTTCACTGAGCTTGAAGTTAAAGGGACAGCCTTGC
CCTCCTCTGAAAATAGTATGTAAATATTGCACAGGACAAATTAATGTTATTTCCCACAAC
CAAAACTTTGGCTGAAGATTAAAGGATGTATTTAAGGCTATACGAATTAGGGAAAGAATT
TGGTCGAAATTAGGAGTGAGTTCTGTTTTTAAACAGACTTTTTTTTTCCTTGTAAACTTT
GTATGTGGTGTGAGGGAGGTCATATTTCAAAGACTTTTAGCATTGTTTTGATAACAAGCT
TCTGTATTTATCAAAGTGGGGGAACAAAAAGATTACAAGGTTACATTTTCAGAACTGTTG
TAAAGGCCATTTAATAAAGGTATGTCTGGATCTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26352666|dbj|BAC39963.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26352666|dbj|BAC39963.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-559, - strand, RNAz p=0.994194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, - strand, RNAz p=0.994194

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-997, gnl|bosTau2|chr14 (19248787-19247798)
               

               
               1-997, gnl|Hg17|chr8 (67504425-67505482)
               

               
               1-997, gnl|Mm7|chr1 (9688732-9689665)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-997, gnl|bosTau2|chr14 (19248787-19247798)
               

               
               1-997, gnl|Hg17|chr8 (67504425-67505482)
               

               
               1-997, gnl|Mm7|chr1 (9688732-9689665)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sag (0.182715)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-997, gnl\|bosTau2\|chr14 (19248787-19247798)
	1-997, gnl\|Hg17\|chr8 (67504425-67505482)
	1-997, gnl\|Mm7\|chr1 (9688732-9689665)

	sag (0.182715)
	cki (0.165235)
	lnt (0.142308)
	cst (0.140036)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	spc (0.113366)
	ldo (0.0970026)