Non-Coding RNA Search

Ss1.1-Pig4-TMW8024M22.3

Sequence:


               
               GATGAAATCCTTTGTGAACTAGAGCTTTAAATTTTAAGGTAGAACCCAAAAGGCTGGAAG
GTGGGCTTCAAACTCAGGAGTGTGTTTCTATAGCCGGGGAAATAGACCAGTCATGCTTTG
GAAGGTTAAATTGGCTTGTCTTTACCTCTCCCGATAAGCCCCACTTAACATGCAGCCTAT
ACTTTTCATTGAGATGAAAAACATCAAGAGAAATGACATATGTCTGGGGCAGCAAGAATT
ACACATCCTCAATTTGGATTCTGTTTCCTTCCGCCACTTGCTTTTAGGCAGTTGAGTGTG
GGTAGTGACAAGATATCAAACCCCTTAGTGTTTCCTTTTTGGGAAATGAGGCACTTTAAA
ACAACAACTTATCCACCTGAGTCCTGAAACAATTTGTCTCTCCAGTTTTCTGGCTTACAC
TCAAGTTAGCTCTGATCCAAGTTTACAGGACGACAGCCTTGCTTTAAGCCATGTCCTATG
GTGAGCAAGGTAATAGCAGCTGAGCTGTCGTAGCCTAGGGGTGGACGGGTAGCACCCCCA
AGGTGTCTTGGCTGGAGGAAGTTTCTGAGCAGCTGACTTGACTTTGGTCATCAAGAAGCC
TTTAAGTCCTTTTTAAATTTTTGGTGAGGGCCTCGGGGAAGAAACAAAAATGCCACTTTA
TAACTTCAATAATAGCCTGTAATTTGTATTTATTGTGTGAATTTTTAGTCCTATATTTTA
ATAATTTGTAAGTTGATATCTTATTCCAAGAATCCTTTGAACTTGCAGGAGAACATCTGG
GAGTCCAATCCCCTGTCCCCATCCTGACCCCTGCATTCTGGACTGTTTAATCCACTTTGG
GATGGATCAGAGAGTCTAGAGAGAACCACTCCTGGGTCCAGCTGCTGGCCTCCTGACTCT
CTAAAGCCTTCACTGGAATTGGACATTAGCTCCAGCTCTAGCTGTGAGCCTGACCAGAGA
CATTATTTATAATTCAGCCATTTAAGATATACCTGTACTCAAAAAGTCCTGTATATTTTT
TAAAAGTTTTATTTTTCAGGTGAACAAAAATACATTTAAAAACTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAAATCCTTTGTGAACTAGAGCTTTAAATTTTAAGGTAGAACCCAAAAGGCTGGAAG
GTGGGCTTCAAACTCAGGAGTGTGTTTCTATAGCCGGGGAAATAGACCAGTCATGCTTTG
GAAGGTTAAATTGGCTTGTCTTTACCTCTCCCGATAAGCCCCACTTAACATGCAGCCTAT
ACTTTTCATTGAGATGAAAAACATCAAGAGAAATGACATATGTCTGGGGCAGCAAGAATT
ACACATCCTCAATTTGGATTCTGTTTCCTTCCGCCACTTGCTTTTAGGCAGTTGAGTGTG
GGTAGTGACAAGATATCAAACCCCTTAGTGTTTCCTTTTTGGGAAATGAGGCACTTTAAA
ACAACAACTTATCCACCTGAGTCCTGAAACAATTTGTCTCTCCAGTTTTCTGGCTTACAC
TCAAGTTAGCTCTGATCCAAGTTTACAGGACGACAGCCTTGCTTTAAGCCATGTCCTATG
GTGAGCAAGGTAATAGCAGCTGAGCTGTCGTAGCCTAGGGGTGGACGGGTAGCACCCCCA
AGGTGTCTTGGCTGGAGGAAGTTTCTGAGCAGCTGACTTGACTTTGGTCATCAAGAAGCC
TTTAAGTCCTTTTTAAATTTTTGGTGAGGGCCTCGGGGAAGAAACAAAAATGCCACTTTA
TAACTTCAATAATAGCCTGTAATTTGTATTTATTGTGTGAATTTTTAGTCCTATATTTTA
ATAATTTGTAAGTTGATATCTTATTCCAAGAATCCTTTGAACTTGCAGGAGAACATCTGG
GAGTCCAATCCCCTGTCCCCATCCTGACCCCTGCATTCTGGACTGTTTAATCCACTTTGG
GATGGATCAGAGAGTCTAGAGAGAACCACTCCTGGGTCCAGCTGCTGGCCTCCTGACTCT
CTAAAGCCTTCACTGGAATTGGACATTAGCTCCAGCTCTAGCTGTGAGCCTGACCAGAGA
CATTATTTATAATTCAGCCATTTAAGATATACCTGTACTCAAAAAGTCCTGTATATTTTT
TAAAAGTTTTATTTTTCAGGTGAACAAAAATACATTTAAAAACTCTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               247-555, - strand, RNAz p=0.984918

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-555, - strand, RNAz p=0.984918

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               26-1068, gnl|bosTau2|chr10 (23712820-23713866)
               

               
               26-1068, gnl|Hg17|chr15 (38405155-38406204)
               

               
               26-1068, gnl|Mm7|chr2 (118488629-118489655)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1068, gnl|bosTau2|chr10 (23712820-23713866)
               

               
               26-1068, gnl|Hg17|chr15 (38405155-38406204)
               

               
               26-1068, gnl|Mm7|chr2 (118488629-118489655)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	26-1068, gnl\|bosTau2\|chr10 (23712820-23713866)
	26-1068, gnl\|Hg17\|chr15 (38405155-38406204)
	26-1068, gnl\|Mm7\|chr2 (118488629-118489655)

	pla (0.401016)
	sin (0.349895)
	nms (0.213858)
	cje (0.165235)
	tbr (0.154178)
	isp (0.150376)
	lnt (0.142308)
	ste (0.135208)
	ute (0.132784)
	cbr (0.127975)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)
	ldo (0.0970026)