Ss1.1-Pig4-TMW8024M23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTATGAGACCCGGGTTGGGGGGACGGCTCCCGGGCCTCCCCGGAAAAGACTCGACTCTCG CCCTGGCTCCCCTGCCCTCTACTTCTTCCCCGAAGCCAGTCTGGTTCGCAAGTCTCCAGA CCCCTTTGGAGCAGCAGCTGCCCAGAGCCTCAGCCTCGCCCGTTCCATGCTGGCCATCAG TGGCCACCTGGATAGCGATGACGATAGTGGCTCCGGAAGCCTCGTTGGCATTGACAACAA GATCGAACAAGCCATGGACTTGGTGAAGTCCCACCTCATGTTTGCGGTCCGGGAGGAGGT GGAGGTGCTGAAGGAGCAGATCCGGGACCTGGCCGAGCGGAATGCCGCGCTGGAGCAGGA GAATGGACTGCTGCGTGCCTTGGCCAGCCCCGAGCAGCTGGCCCAGCTGCCTTCCTCGGG GGTCCCGAGGCTCGGGCCCCCAGCGCCCAACGGGCCCTCAGTCTGAGCCTCCCTTCCCTC ACAATGTGCCTTTGGGGGCTGTCACAGCTGCTAGACCTTGCGCCAGCTGCCTGCCCCCTC TTCCTATGCAGCTTTAATGTCCCTTGATCCCCGGGGATGGGAGTCAAAGGCTCAGAAGTG GCCTGTCCCCCACCCTTCCTCCGTCTCCCCCCAGTGCCCAGGGACCGGACTGGGCATCCC TAGGCGTTGATGAAGGAGGGAGGGTATCAGGATGGGGTGTTAGATGGAGCCCCCCTCCTC CCTCCCTGGGCGTCGGTGTTCTGGGACCCCCGGCAATAGATGGCTTGGGGAGCAGGAGGC TCCCTGGCAGACATCCCATCCCCTCCTTGTTCCCCGAGTGCCCCCCCTCTCCTCTGCCCA GGGGAGGGAGTATGGACAGTATCTGCAAGTTCTGGGATTCAGGTTGTTATTAAAATAATA ATTATAATTAAAAAATCCGGAGAAACTTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTATGAGACCCGGGTTGGGGGGACGGCTCCCGGGCCTCCCCGGAAAAGACTCGACTCTCG CCCTGGCTCCCCTGCCCTCTACTTCTTCCCCGAAGCCAGTCTGGTTCGCAAGTCTCCAGA CCCCTTTGGAGCAGCAGCTGCCCAGAGCCTCAGCCTCGCCCGTTCCATGCTGGCCATCAG TGGCCACCTGGATAGCGATGACGATAGTGGCTCCGGAAGCCTCGTTGGCATTGACAACAA GATCGAACAAGCCATGGACTTGGTGAAGTCCCACCTCATGTTTGCGGTCCGGGAGGAGGT GGAGGTGCTGAAGGAGCAGATCCGGGACCTGGCCGAGCGGAATGCCGCGCTGGAGCAGGA GAATGGACTGCTGCGTGCCTTGGCCAGCCCCGAGCAGCTGGCCCAGCTGCCTTCCTCGGG GGTCCCGAGGCTCGGGCCCCCAGCGCCCAACGGGCCCTCAGTCTGAGCCTCCCTTCCCTC ACAATGTGCCTTTGGGGGCTGTCACAGCTGCTAGACCTTGCGCCAGCTGCCTGCCCCCTC TTCCTATGCAGCTTTAATGTCCCTTGATCCCCGGGGATGGGAGTCAAAGGCTCAGAAGTG GCCTGTCCCCCACCCTTCCTCCGTCTCCCCCCAGTGCCCAGGGACCGGACTGGGCATCCC TAGGCGTTGATGAAGGAGGGAGGGTATCAGGATGGGGTGTTAGATGGAGCCCCCCTCCTC CCTCCCTGGGCGTCGGTGTTCTGGGACCCCCGGCAATAGATGGCTTGGGGAGCAGGAGGC TCCCTGGCAGACATCCCATCCCCTCCTTGTTCCCCGAGTGCCCCCCCTCTCCTCTGCCCA GGGGAGGGAGTATGGACAGTATCTGCAAGTTCTGGGATTCAGGTTGTTATTAAAATAATA ATTATAATTAAAAAATCCGGAGAAACTTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 51-207, gnl|bosTau2|chr25 (32489372-32489528) | |
| 51-207, gnl|Hg17|chr7 (99716704-99716548) | |
| 51-207, gnl|Mm7|chr5 (136669220-136669370) | |
| 256-406, gnl|bosTau2|chr12 (5562484-5562634) | |
| 256-406, gnl|canFam2|chr22 (9447546-9447398) | |
| 256-406, gnl|danRer3|chrUn (93349548-93349695) | |
| 256-406, gnl|dasNov1|scaffold_12396 (43864-44012) | |
| 256-406, gnl|echTel1|scaffold_301351 (6077-6230) | |
| 256-406, gnl|fr1|chrUn (228749435-228749583) | |
| 256-406, gnl|galGal2|chr9 (23097276-23097418) | |
| 256-406, gnl|hg17|chr13 (43906830-43906978) | |
| 256-406, gnl|Hg17|chr13 (43907020-43906870) | |
| 256-406, gnl|loxAfr1|scaffold_28337 (14246-14394) | |
| 256-406, gnl|mm7|chr14 (71186958-71186810) | |
| 256-406, gnl|Mm7|chr14 (71186766-71186916) | |
| 256-406, gnl|monDom2|scaffold_64 (6854910-6855058) | |
| 256-406, gnl|oryCun1|scaffold_111561 (4441-4293) | |
| 256-406, gnl|panTro1|chr14 (43621035-43621183) | |
| 256-406, gnl|rheMac2|chr17 (23348829-23348977) | |
| 256-406, gnl|rn3|chr15 (57517474-57517326) | |
| 256-406, gnl|tetNig1|chr2 (14327051-14326903) | |
| 256-406, gnl|xenTro1|scaffold_305 (391699-391847) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-207, gnl|bosTau2|chr25 (32489372-32489528) | |
| 51-207, gnl|Hg17|chr7 (99716704-99716548) | |
| 51-207, gnl|Mm7|chr5 (136669220-136669370) | |
| 256-406, gnl|bosTau2|chr12 (5562484-5562634) | |
| 256-406, gnl|canFam2|chr22 (9447546-9447398) | |
| 256-406, gnl|danRer3|chrUn (93349548-93349695) | |
| 256-406, gnl|dasNov1|scaffold_12396 (43864-44012) | |
| 256-406, gnl|echTel1|scaffold_301351 (6077-6230) | |
| 256-406, gnl|fr1|chrUn (228749435-228749583) | |
| 256-406, gnl|galGal2|chr9 (23097276-23097418) | |
| 256-406, gnl|hg17|chr13 (43906830-43906978) | |
| 256-406, gnl|Hg17|chr13 (43907020-43906870) | |
| 256-406, gnl|loxAfr1|scaffold_28337 (14246-14394) | |
| 256-406, gnl|mm7|chr14 (71186958-71186810) | |
| 256-406, gnl|Mm7|chr14 (71186766-71186916) | |
| 256-406, gnl|monDom2|scaffold_64 (6854910-6855058) | |
| 256-406, gnl|oryCun1|scaffold_111561 (4441-4293) | |
| 256-406, gnl|panTro1|chr14 (43621035-43621183) | |
| 256-406, gnl|rheMac2|chr17 (23348829-23348977) | |
| 256-406, gnl|rn3|chr15 (57517474-57517326) | |
| 256-406, gnl|tetNig1|chr2 (14327051-14326903) | |
| 256-406, gnl|xenTro1|scaffold_305 (391699-391847) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| hyp (1.28553) | |
| cbr (0.511902) | |
| amn (0.417711) | |
| pty (0.285429) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (1.28553) | |
| cbr (0.511902) | |
| amn (0.417711) | |
| pty (0.285429) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cly (0.120642) | |
| jej (0.0989218) |