Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N02.5

Sequence:


               
               TGCAGTGCTGTTTATACTTTGGGTGATGAGATAGGATTCCTAGCTACAAACCAGATTACT
CACCCATGCATACAGTAATAACTAATGAAAGAAAATAACTTCTGCAGCTGAAATAATCAA
AATAATTCCTTCAACTTTTGAAATATTTTATATTGCTTGCACTGTAGGATTCATAAAAGA
AATTTAGTTTAAATGTATTGGATTGTTAAATATATTGGGGAAGATGTGAGCTCTATTTTA
GATTCATTAGGTTTAAGAAACTAAAAAAATGTCAATTTAACCCTTAACTTGTGCCTAGAA
ACTACAGCACATAGAATATGCAAACACCAGCCTTAATGCTGTACTTCTCTGCTTATTTTA
CAGGCTCAAAAATATTACTCATCTCATGGTCTTGTGATTTAATTCTTTATGCCCCTCCTT
TTGATTTTAATAATGGTAATGTTAGAAAAACAAAACTCCAGTACTTTCAGAACTTCAGTA
TATGGTTTCATACTTTGACAAGTTATCACTGTAAATACTCAGGTTTTACATTGTGTAATT
TACCTGATAGACTAACTGGTGGAGATATTTTGGCTGTCATTTAGGTACCAACTTTATAAA
GAGTGTTTAGTATATAATAAAATGTAATATTACAGCTTATTTAAAACCAAATATATTTGG
CCATATTCGGAAGAGCAGTTTCTTCAGAGTCACTTAGGAACACTTGAATGTTTTCAAATG
TTATCTACAGGTAATATGTCTCAAATATGTGGGTTTATGTTAAAGAAATATGATTTTTTA
TCTGCAAAAAAAAAATAGATTTTAAGCTTCATTACAAATGACTTTCAGATTTGGGGTACC
AGCTATCATGCTTCCATTTTGTGTTATTTTAAACCACCAAACCAATATTTTTCCTTTACG
GTTTAATCTTATACTGAAATCTGGTGTTAATGAAAGTTTGTCATATTGTTTCAAATAAAG
GTGAAATAGAAAATAATGGAAACTCCAATACATAATTACTTACTGTTAAATTCACAACTT
AAATTCGTGCTTTTGGGGAAAGCTGATTGGGCATTGAATCTGTATATTTAGCTCTTTAAA
ATACTTGGGCTCTTCGGATGAGGTCACTATTGAACAAAGTTGTTTATTCCTCTTCTAAAG
TTTTAAAATACTTGTCAAATGAATGATTTCCTTTTGAAATAAATTAGATCTTCTTTTAAT
ATGAAAGTCCTTAGGTAAAAATAAAAACAGTGTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGTGCTGTTTATACTTTGGGTGATGAGATAGGATTCCTAGCTACAAACCAGATTACT
CACCCATGCATACAGTAATAACTAATGAAAGAAAATAACTTCTGCAGCTGAAATAATCAA
AATAATTCCTTCAACTTTTGAAATATTTTATATTGCTTGCACTGTAGGATTCATAAAAGA
AATTTAGTTTAAATGTATTGGATTGTTAAATATATTGGGGAAGATGTGAGCTCTATTTTA
GATTCATTAGGTTTAAGAAACTAAAAAAATGTCAATTTAACCCTTAACTTGTGCCTAGAA
ACTACAGCACATAGAATATGCAAACACCAGCCTTAATGCTGTACTTCTCTGCTTATTTTA
CAGGCTCAAAAATATTACTCATCTCATGGTCTTGTGATTTAATTCTTTATGCCCCTCCTT
TTGATTTTAATAATGGTAATGTTAGAAAAACAAAACTCCAGTACTTTCAGAACTTCAGTA
TATGGTTTCATACTTTGACAAGTTATCACTGTAAATACTCAGGTTTTACATTGTGTAATT
TACCTGATAGACTAACTGGTGGAGATATTTTGGCTGTCATTTAGGTACCAACTTTATAAA
GAGTGTTTAGTATATAATAAAATGTAATATTACAGCTTATTTAAAACCAAATATATTTGG
CCATATTCGGAAGAGCAGTTTCTTCAGAGTCACTTAGGAACACTTGAATGTTTTCAAATG
TTATCTACAGGTAATATGTCTCAAATATGTGGGTTTATGTTAAAGAAATATGATTTTTTA
TCTGCAAAAAAAAAATAGATTTTAAGCTTCATTACAAATGACTTTCAGATTTGGGGTACC
AGCTATCATGCTTCCATTTTGTGTTATTTTAAACCACCAAACCAATATTTTTCCTTTACG
GTTTAATCTTATACTGAAATCTGGTGTTAATGAAAGTTTGTCATATTGTTTCAAATAAAG
GTGAAATAGAAAATAATGGAAACTCCAATACATAATTACTTACTGTTAAATTCACAACTT
AAATTCGTGCTTTTGGGGAAAGCTGATTGGGCATTGAATCTGTATATTTAGCTCTTTAAA
ATACTTGGGCTCTTCGGATGAGGTCACTATTGAACAAAGTTGTTTATTCCTCTTCTAAAG
TTTTAAAATACTTGTCAAATGAATGATTTCCTTTTGAAATAAATTAGATCTTCTTTTAAT
ATGAAAGTCCTTAGGTAAAAATAAAAACAGTGTATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               109-1235, gnl|bosTau2|chr23 (40602391-40603561)
               

               
               109-1235, gnl|Hg17|chr6 (47700572-47701731)
               

               
               109-1235, gnl|Mm7|chr17 (40914534-40913355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-1235, gnl|bosTau2|chr23 (40602391-40603561)
               

               
               109-1235, gnl|Hg17|chr6 (47700572-47701731)
               

               
               109-1235, gnl|Mm7|chr17 (40914534-40913355)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               lin (0.582411)
               

               
               kid (0.259471)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               kid (0.259471)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	109-1235, gnl\|bosTau2\|chr23 (40602391-40603561)
	109-1235, gnl\|Hg17\|chr6 (47700572-47701731)
	109-1235, gnl\|Mm7\|chr17 (40914534-40913355)

	lin (0.582411)
	kid (0.259471)
	col (0.195008)
	fty (0.17584)
	sin (0.174948)
	fat (0.147427)
	liv (0.146284)
	thg (0.126791)
	pgl (0.118483)