Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N03.5

Sequence:


               
               AGCTAGTCACCGGCCCCTGCCCAGAATGCCTGTGTAGCTTCCGCAGAGAGGTGCTTCTCC
CGAGTCCTGAGGAGCCGCCCAGCTTCTGAGAACTGGGGAGCAGCATCCCAGCCATGCCGC
CCTGCGGTACTCCGCTGGGGGGTCAGGGGCTCGGAGTGCACAAGCCCCTCCGGCTCCGGA
GGGAGAGGTGAGCGCCGGGCAGCCAGCCCGCAGCCAGTGTGCGGGAGCCCGGGGCCTGTC
ATGGTGGCCGCCCGCCGGCTGGAGGCTCTCCCAGACGGGTTTGCAGCTGAGCTTGCGTAT
CTGGTGTGGGAAGACGATGGGGAGTTACTTGTCAGTCCCGGCTTACTTCACCTCCAGAGA
CCCCTTCCGGTGTTCAGAATGCCAGGATTCCCTTACCAACTGGTACTACGAGAAGGATGG
GAAGCTTTACTGCCACAAGGACTACTGGGGGAAGTTTGGGGAGTTCTGCCATGGATGCTC
CCTGCTGATGACAGGACCCGCCATGGTGGCCGGGGAGTTCAAGTACCACCCAGAGTGCTT
TGCCTGTATGAGCTGCAAGGTGATCATTGAGGATGGAGATGCATATGCCCTGGTGCAGCA
TGCCACCCTCTACTGTGGGAAGTGCCACAACGAGGTGGTGCTGGCACCCATGTTTGAGAG
GCTGTCCACGGAGTCTGTTCAGGACCAGCTGCCCTACTCCGTCACACACATCTCCCTGCC
GGCCACCACTGAGGGCAGGCGGGGCTTCTCAGTGTCTGTGGAGAGTGCCTGCTCCAACTA
CGCCACCACTGTGCAAGTAAAGGAGGTCAACCGGATGCACATCAGTCCCAACAACCGCAA
TGCCATCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTAGTCACCGGCCCCTGCCCAGAATGCCTGTGTAGCTTCCGCAGAGAGGTGCTTCTCC
CGAGTCCTGAGGAGCCGCCCAGCTTCTGAGAACTGGGGAGCAGCATCCCAGCCATGCCGC
CCTGCGGTACTCCGCTGGGGGGTCAGGGGCTCGGAGTGCACAAGCCCCTCCGGCTCCGGA
GGGAGAGGTGAGCGCCGGGCAGCCAGCCCGCAGCCAGTGTGCGGGAGCCCGGGGCCTGTC
ATGGTGGCCGCCCGCCGGCTGGAGGCTCTCCCAGACGGGTTTGCAGCTGAGCTTGCGTAT
CTGGTGTGGGAAGACGATGGGGAGTTACTTGTCAGTCCCGGCTTACTTCACCTCCAGAGA
CCCCTTCCGGTGTTCAGAATGCCAGGATTCCCTTACCAACTGGTACTACGAGAAGGATGG
GAAGCTTTACTGCCACAAGGACTACTGGGGGAAGTTTGGGGAGTTCTGCCATGGATGCTC
CCTGCTGATGACAGGACCCGCCATGGTGGCCGGGGAGTTCAAGTACCACCCAGAGTGCTT
TGCCTGTATGAGCTGCAAGGTGATCATTGAGGATGGAGATGCATATGCCCTGGTGCAGCA
TGCCACCCTCTACTGTGGGAAGTGCCACAACGAGGTGGTGCTGGCACCCATGTTTGAGAG
GCTGTCCACGGAGTCTGTTCAGGACCAGCTGCCCTACTCCGTCACACACATCTCCCTGCC
GGCCACCACTGAGGGCAGGCGGGGCTTCTCAGTGTCTGTGGAGAGTGCCTGCTCCAACTA
CGCCACCACTGTGCAAGTAAAGGAGGTCAACCGGATGCACATCAGTCCCAACAACCGCAA
TGCCATCCACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1000690|dbj|BAA06676.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1000690|dbj|BAA06676.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-372, gnl|bosTau2|chr17 (44162814-44162439)
               

               
               2-372, gnl|Hg17|chr22 (29968924-29969312)
               

               
               2-372, gnl|Mm7|chr11 (3323349-3322969)
               


               
               615-805, gnl|bosTau2|chr17 (44152704-44152514)
               

               
               615-805, gnl|Hg17|chr22 (29980428-29980618)
               

               
               615-805, gnl|Mm7|chr11 (3310302-3310112)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-372, gnl|bosTau2|chr17 (44162814-44162439)
               

               
               2-372, gnl|Hg17|chr22 (29968924-29969312)
               

               
               2-372, gnl|Mm7|chr11 (3323349-3322969)
               


               
               615-805, gnl|bosTau2|chr17 (44152704-44152514)
               

               
               615-805, gnl|Hg17|chr22 (29980428-29980618)
               

               
               615-805, gnl|Mm7|chr11 (3310302-3310112)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	2-372, gnl\|bosTau2\|chr17 (44162814-44162439)
	2-372, gnl\|Hg17\|chr22 (29968924-29969312)
	2-372, gnl\|Mm7\|chr11 (3323349-3322969)

	615-805, gnl\|bosTau2\|chr17 (44152704-44152514)
	615-805, gnl\|Hg17\|chr22 (29980428-29980618)
	615-805, gnl\|Mm7\|chr11 (3310302-3310112)