Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N06.3

Sequence:


               
               GGGAATCCCATCTGTTCCCCTCAGTACTGGAAGGCGAGCACGTTTGGTGGCGAGATGGGC
TTCAACCTTGTCAAGACGGCCACGCTGAGGAAGCTGGTTTGCCTCAACACCAAGACTTGT
CCCTACGTTGCCTTCCGAGTGCCAGACCTGCGCCAGGAGGATGGGCCTGGTGTGGAGCGG
CCGTCCACAGAGCTCTGAGGGAGTATGGCAGCAGCATTCTGGATAGGAGGGCTCCATGAT
CGTCTTTCCAGAATGCTGAGGCCGGGGTCGATAGTCTTAACTGGGTTTCCGGTTTGGCAT
CGAGAGTGTCAGAGTGGACACTTAGAACTCTGGGTCTCTTATCCGTGATCTGGAACATGG
TGGTCTTGCTTGGTGTTCAAGAAATGCTGAATTCTTGGTTAGCCATCCAGAATGAACACT
GGGCTCCTGGTTGACCACCTAGAGTGTCAGGTTGTAGACTGATCTGGAACATAGGCATTC
TAAAATATTGGATTCCTGACGAAACAATCTAGAATGTTTGGGGGCTCGTAGCTTGCATTC
TAGAATTTCTGGTGGCCTTCCAGAGCACTGACTTTCTGATTGGCGATTCAGAATGTTGTG
TTCCTGGTTGCTGATCCAGAACAGTGGCTGGTGTACTGGATTGATCCTGATCCGAATGTC
TGGAGTGTTGATCCATTTTCCTGTTCAGTGAGACATCCGCAGAGCAGGAGAATCTGATGT
CTAATGAGAATGCATTGCCTGAATCTGTGCCTGCATGGAGGCGGCAAGGGAGCAGTGTTC
TTTTGGAACCCCAACCAAGACCCTGGTCTGAGGATATGGAGGGAACAGGTGGCTTTTTCC
GGGCCATTGGTTGGAAGCCACCAGAGCTCTGTCCCCATCCAGGGCTCAATTCATGGCAGC
TGTTATTCATGAAGCTAATAAAATTCTTTTTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATCCCATCTGTTCCCCTCAGTACTGGAAGGCGAGCACGTTTGGTGGCGAGATGGGC
TTCAACCTTGTCAAGACGGCCACGCTGAGGAAGCTGGTTTGCCTCAACACCAAGACTTGT
CCCTACGTTGCCTTCCGAGTGCCAGACCTGCGCCAGGAGGATGGGCCTGGTGTGGAGCGG
CCGTCCACAGAGCTCTGAGGGAGTATGGCAGCAGCATTCTGGATAGGAGGGCTCCATGAT
CGTCTTTCCAGAATGCTGAGGCCGGGGTCGATAGTCTTAACTGGGTTTCCGGTTTGGCAT
CGAGAGTGTCAGAGTGGACACTTAGAACTCTGGGTCTCTTATCCGTGATCTGGAACATGG
TGGTCTTGCTTGGTGTTCAAGAAATGCTGAATTCTTGGTTAGCCATCCAGAATGAACACT
GGGCTCCTGGTTGACCACCTAGAGTGTCAGGTTGTAGACTGATCTGGAACATAGGCATTC
TAAAATATTGGATTCCTGACGAAACAATCTAGAATGTTTGGGGGCTCGTAGCTTGCATTC
TAGAATTTCTGGTGGCCTTCCAGAGCACTGACTTTCTGATTGGCGATTCAGAATGTTGTG
TTCCTGGTTGCTGATCCAGAACAGTGGCTGGTGTACTGGATTGATCCTGATCCGAATGTC
TGGAGTGTTGATCCATTTTCCTGTTCAGTGAGACATCCGCAGAGCAGGAGAATCTGATGT
CTAATGAGAATGCATTGCCTGAATCTGTGCCTGCATGGAGGCGGCAAGGGAGCAGTGTTC
TTTTGGAACCCCAACCAAGACCCTGGTCTGAGGATATGGAGGGAACAGGTGGCTTTTTCC
GGGCCATTGGTTGGAAGCCACCAGAGCTCTGTCCCCATCCAGGGCTCAATTCATGGCAGC
TGTTATTCATGAAGCTAATAAAATTCTTTTTCCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-316, + strand, RNAz p=0.999624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-316, + strand, RNAz p=0.999624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               212-258, + strand, RNAmicro p=0.981973

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               212-258, + strand, RNAmicro p=0.981973

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000962, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-414, gnl|bosTau2|chr11 (74384957-74384545)
               

               
               1-414, gnl|Hg17|chr9 (122234180-122234592)
               

               
               1-414, gnl|Mm7|chr2 (36258465-36258848)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-414, gnl|bosTau2|chr11 (74384957-74384545)
               

               
               1-414, gnl|Hg17|chr9 (122234180-122234592)
               

               
               1-414, gnl|Mm7|chr2 (36258465-36258848)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cst (0.420109)
               

               
               che (0.272628)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               che (0.272628)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-414, gnl\|bosTau2\|chr11 (74384957-74384545)
	1-414, gnl\|Hg17\|chr9 (122234180-122234592)
	1-414, gnl\|Mm7\|chr2 (36258465-36258848)

	cst (0.420109)
	che (0.272628)
	nms (0.213858)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	cut (0.169924)
	lun (0.150489)
	spl (0.143184)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)