Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N11.3

Sequence:


               
               CAGCATGCTCTCCTCACCCAAGCTGCCTGTGCCCTCCCTGGGCCTGGCTGCCAGTACCAA
CGGCAGCTCCATCACTCCTGCCCCCAAGATCAAGAAAGAGGAGGACTCAGCCATCCCCAT
CACAGTCCCTGGCCGCCTGCCAGTCTCCCTGGCAGGCCACCCCGTAGTGGCGGCCCAGGC
AGCAGCAGCTCAGGCAGCCGTGGCGGCACAGGCAGCTGCCCTGGAACAGCTCCGGGAGAA
GCTGGAGTCCGGGGAGCCTCCAGAGAAGAAGATGGCTCTGGTGGCAGAGGAGCAACAGCG
GCTCATGCAGCGAGCGCTACAGCAGAACTTTCTGGCCATGACGGCCCAGCTGCCTATGAG
CATCCGGATCAACAGCCAAGCCTCTGAAAGCCGCCAGGACTCAGCTGCAAACCTGACCAG
CACCAATGGCAGCAACAGTATTAGCATGTCAGTAGAGATTAACGGAATCATGTACACAGG
AGTGCTGTTCGCCCAGCCACCGGCCCCCACGCCACCCTCAGCTCCCAGCAAAGGTGGAGG
TGGCGGCAACCGGGGAGGAAACAGTGGGACCAGCAGCAGCAGCAGCAGCAGCAGCACCGG
CAGTGCAGGCAGCCAGGCCGGGCCAGCAGGGTTGTCTGCACCTACCACATCTTCTACCTC
AAATAACTCATTGCCTTAACCGCAACACTCCCCACCCTGGGAGCCTGCCAGACTGGGCAG
GGGGTCGAGGTGGGCCAAGCAGGGGCCGGGATGGCGGAAGATACGGGTGGGGAGGGGAGA
GATCCACATAGGAGCCACAGCTAACGCCAAAAAGAAGAGAAAAATATATATACATATATA
TATATATAAAGAAAATTTAATAAAACAGGGGAAAACCAAGGAACACTTGAATTACTCAGG
TTTCGGACATTCAGAGAGATGAATTGTGAGAACAGCTAAGGAAATCAGCAAGGAGAGAGG
CAGATGTCTCCTAGGGCTTTCCGGCAGCCCTGGTGGACCCCCATGGACTGGTGTCTGGTG
TCTGATCTGGACAGGCCGATCCTGTTTACCTCATACATCCCTGCACTGTTTTTTCATTTT
TATGTTTTTTTTTTGTTTGTTTTGTTTTGTTTTCTGTTCATCACACACTTACCACACCCA
GCTCCTTGTGTTGAATGAAACCCCTGAGCCAAGATCAGTTGAATTTTTTTTGCGTGTTGC
TTTCGGGAACTTTTTTTTTTTTTAAAGAAATAGCCAAATTCAAACTCTATAGGATTTTTA
AGAGGTTTTGGGGGTTTTATTTTGTAAATATTCTATTTTATTCTTGGGGGAGGAATCAAA
CCTAGGAAAAGGATATATATATCTCTATATATTTGTGTTCATTCAGGGAAACTGAACTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCATGCTCTCCTCACCCAAGCTGCCTGTGCCCTCCCTGGGCCTGGCTGCCAGTACCAA
CGGCAGCTCCATCACTCCTGCCCCCAAGATCAAGAAAGAGGAGGACTCAGCCATCCCCAT
CACAGTCCCTGGCCGCCTGCCAGTCTCCCTGGCAGGCCACCCCGTAGTGGCGGCCCAGGC
AGCAGCAGCTCAGGCAGCCGTGGCGGCACAGGCAGCTGCCCTGGAACAGCTCCGGGAGAA
GCTGGAGTCCGGGGAGCCTCCAGAGAAGAAGATGGCTCTGGTGGCAGAGGAGCAACAGCG
GCTCATGCAGCGAGCGCTACAGCAGAACTTTCTGGCCATGACGGCCCAGCTGCCTATGAG
CATCCGGATCAACAGCCAAGCCTCTGAAAGCCGCCAGGACTCAGCTGCAAACCTGACCAG
CACCAATGGCAGCAACAGTATTAGCATGTCAGTAGAGATTAACGGAATCATGTACACAGG
AGTGCTGTTCGCCCAGCCACCGGCCCCCACGCCACCCTCAGCTCCCAGCAAAGGTGGAGG
TGGCGGCAACCGGGGAGGAAACAGTGGGACCAGCAGCAGCAGCAGCAGCAGCAGCACCGG
CAGTGCAGGCAGCCAGGCCGGGCCAGCAGGGTTGTCTGCACCTACCACATCTTCTACCTC
AAATAACTCATTGCCTTAACCGCAACACTCCCCACCCTGGGAGCCTGCCAGACTGGGCAG
GGGGTCGAGGTGGGCCAAGCAGGGGCCGGGATGGCGGAAGATACGGGTGGGGAGGGGAGA
GATCCACATAGGAGCCACAGCTAACGCCAAAAAGAAGAGAAAAATATATATACATATATA
TATATATAAAGAAAATTTAATAAAACAGGGGAAAACCAAGGAACACTTGAATTACTCAGG
TTTCGGACATTCAGAGAGATGAATTGTGAGAACAGCTAAGGAAATCAGCAAGGAGAGAGG
CAGATGTCTCCTAGGGCTTTCCGGCAGCCCTGGTGGACCCCCATGGACTGGTGTCTGGTG
TCTGATCTGGACAGGCCGATCCTGTTTACCTCATACATCCCTGCACTGTTTTTTCATTTT
TATGTTTTTTTTTTGTTTGTTTTGTTTTGTTTTCTGTTCATCACACACTTACCACACCCA
GCTCCTTGTGTTGAATGAAACCCCTGAGCCAAGATCAGTTGAATTTTTTTTGCGTGTTGC
TTTCGGGAACTTTTTTTTTTTTTAAAGAAATAGCCAAATTCAAACTCTATAGGATTTTTA
AGAGGTTTTGGGGGTTTTATTTTGTAAATATTCTATTTTATTCTTGGGGGAGGAATCAAA
CCTAGGAAAAGGATATATATATCTCTATATATTTGTGTTCATTCAGGGAAACTGAACTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N4Z3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N4Z3_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               97-280, - strand, RNAz p=0.996571
               

               
               676-843, - strand, RNAz p=0.982794

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-280, - strand, RNAz p=0.996571
               

               
               676-843, - strand, RNAz p=0.982794

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               97-380, gnl|bosTau2|chr7 (10255074-10255357)
               

               
               97-380, gnl|Hg17|chr19 (917570-917868)
               

               
               97-380, gnl|Mm7|chr10 (79730642-79730940)
               


               
               477-1380, gnl|bosTau2|chr7 (10257410-10258300)
               

               
               477-1380, gnl|Hg17|chr19 (922875-923781)
               

               
               477-1380, gnl|Mm7|chr10 (79731753-79732660)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-380, gnl|bosTau2|chr7 (10255074-10255357)
               

               
               97-380, gnl|Hg17|chr19 (917570-917868)
               

               
               97-380, gnl|Mm7|chr10 (79730642-79730940)
               


               
               477-1380, gnl|bosTau2|chr7 (10257410-10258300)
               

               
               477-1380, gnl|Hg17|chr19 (922875-923781)
               

               
               477-1380, gnl|Mm7|chr10 (79731753-79732660)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	97-280, - strand, RNAz p=0.996571
	676-843, - strand, RNAz p=0.982794

	97-380, gnl\|bosTau2\|chr7 (10255074-10255357)
	97-380, gnl\|Hg17\|chr19 (917570-917868)
	97-380, gnl\|Mm7\|chr10 (79730642-79730940)

	477-1380, gnl\|bosTau2\|chr7 (10257410-10258300)
	477-1380, gnl\|Hg17\|chr19 (922875-923781)
	477-1380, gnl\|Mm7\|chr10 (79731753-79732660)

	cut (0.169924)
	cje (0.165235)
	lnt (0.142308)
	eep (0.122564)
	pgl (0.118483)
	ecc (0.115035)
	eje (0.0988338)