Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N14.3

Sequence:


               
               CTTAGTTCCCTAGACTACCCAGGAAAGTTTTGGAGTCTAGGGAAGTGGCCACCCAGTGAA
TCTCAGCCCCCTATTCACTGCTTTGTATGCATTCTTTTTTTCTTCCTCTTTAAAAACAAA
ACCTTTAAAAAGAAAAAATAATAAGTAAGTAGGTAGTACTGATAAACATTTTAGCTCATG
GAACTTGGTTAGGATGGCTGGGGGTACAAGTCCCCAAACTACCTCTTGCAGTAGCCAGGG
TGAGTGGGATTTAGTGAAGCGGTACTTTAGGTTTGGGGTGGATTGGAAAAGTGGGACAGG
ATCAGCAGCCTCATACCCTCTCCCTTCCCTGTCTGAGATCTCACATTCCCTCTATCATAG
GGTTGTCAAGGAGATGCTGTGGGTACCAAGGAACTCACTTGGCAATCAGAGCATCATGCT
TTCAGGGTGGGGTGCTCAGGCCGGGAGAGTAGAATGCCATTCCAGTGGAGGAGCCACAAA
AATGCCTTAATATGAGCCCATTTCTGCCCCTGCTGATGAGTGACTTGAGGGTTCTTGGTT
TTCTTTTCTTGTCCTCCTTCCCTCCCCTCTATCCTTCCATGGGTGGGGAAGGGGTGTTTT
TGGTAGAGCTTGATTTCAGAAGCACCTGGCCTCTTTACATTCTCAAGTGGCAGTTTCATT
TACAATGCAAAGTGAAACATCTTTTGGATATCTTTTCTATGTATTCTATATAGCTTTACA
TATGTGAAGGTATGGGGAGGTGTTTTAAAACATAACTTTTTTCCTTGATATCAGAAAGAA
AAATAAAATTAAACCACAATTAAGATTTGCCTTTCAAACCCTCAGGTGTTACCTCTAACC
AGGTGGCCCTGGTCACCATCAGAGGACTGGAACCAAGGAGCCCTTGTTCCTTTTGTGTGT
TTATTCTGGACTATTGGAGTGGAAATGAGCTTGTTCCTACTGGAGTTTAATTCCAATGCT
TTTGACTCCACAAAGACCCCAGTGCCTTTCGACAATGGCCAGGGTTTCCCCTATTTTCCC
ACCATTCTTTCCCAAAGGAAACTCATTCCAAATACTTACCTTTTCCACTGAGGTCTTTGA
AGGAAAATGGAATTCTGGTTCATACTGTGGTCTGTTGTAACCTCAGGTCTTTAATGTGAT
CACTTTCAAATTTAAAAGATCCAGGTGGAAGTATTTTTACTATGCTAGTAATAATTCTAC
AAAATACCTGAATTCTTAATACTGTTATGTTTCGGTATAAGTGGTGACTTTCTTTTCATG
TTATTTGATCTGGTTTCATTCCTGTAATACAGCCACCTGATTTTGTGCAGGGGGGAATAA
TATGTGGTTTTTGTACAAATATGTTTCACTGTGTTATTTTGGAAAAGTGAAGGGAGGGAG
TTTGGGAAGATTGGAGGAAATTAAGAAGACCTAATCTCCCTCCTTTCAGTGAATAAATGG
ACCATCATTTCTGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGTTCCCTAGACTACCCAGGAAAGTTTTGGAGTCTAGGGAAGTGGCCACCCAGTGAA
TCTCAGCCCCCTATTCACTGCTTTGTATGCATTCTTTTTTTCTTCCTCTTTAAAAACAAA
ACCTTTAAAAAGAAAAAATAATAAGTAAGTAGGTAGTACTGATAAACATTTTAGCTCATG
GAACTTGGTTAGGATGGCTGGGGGTACAAGTCCCCAAACTACCTCTTGCAGTAGCCAGGG
TGAGTGGGATTTAGTGAAGCGGTACTTTAGGTTTGGGGTGGATTGGAAAAGTGGGACAGG
ATCAGCAGCCTCATACCCTCTCCCTTCCCTGTCTGAGATCTCACATTCCCTCTATCATAG
GGTTGTCAAGGAGATGCTGTGGGTACCAAGGAACTCACTTGGCAATCAGAGCATCATGCT
TTCAGGGTGGGGTGCTCAGGCCGGGAGAGTAGAATGCCATTCCAGTGGAGGAGCCACAAA
AATGCCTTAATATGAGCCCATTTCTGCCCCTGCTGATGAGTGACTTGAGGGTTCTTGGTT
TTCTTTTCTTGTCCTCCTTCCCTCCCCTCTATCCTTCCATGGGTGGGGAAGGGGTGTTTT
TGGTAGAGCTTGATTTCAGAAGCACCTGGCCTCTTTACATTCTCAAGTGGCAGTTTCATT
TACAATGCAAAGTGAAACATCTTTTGGATATCTTTTCTATGTATTCTATATAGCTTTACA
TATGTGAAGGTATGGGGAGGTGTTTTAAAACATAACTTTTTTCCTTGATATCAGAAAGAA
AAATAAAATTAAACCACAATTAAGATTTGCCTTTCAAACCCTCAGGTGTTACCTCTAACC
AGGTGGCCCTGGTCACCATCAGAGGACTGGAACCAAGGAGCCCTTGTTCCTTTTGTGTGT
TTATTCTGGACTATTGGAGTGGAAATGAGCTTGTTCCTACTGGAGTTTAATTCCAATGCT
TTTGACTCCACAAAGACCCCAGTGCCTTTCGACAATGGCCAGGGTTTCCCCTATTTTCCC
ACCATTCTTTCCCAAAGGAAACTCATTCCAAATACTTACCTTTTCCACTGAGGTCTTTGA
AGGAAAATGGAATTCTGGTTCATACTGTGGTCTGTTGTAACCTCAGGTCTTTAATGTGAT
CACTTTCAAATTTAAAAGATCCAGGTGGAAGTATTTTTACTATGCTAGTAATAATTCTAC
AAAATACCTGAATTCTTAATACTGTTATGTTTCGGTATAAGTGGTGACTTTCTTTTCATG
TTATTTGATCTGGTTTCATTCCTGTAATACAGCCACCTGATTTTGTGCAGGGGGGAATAA
TATGTGGTTTTTGTACAAATATGTTTCACTGTGTTATTTTGGAAAAGTGAAGGGAGGGAG
TTTGGGAAGATTGGAGGAAATTAAGAAGACCTAATCTCCCTCCTTTCAGTGAATAAATGG
ACCATCATTTCTGGAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812051|ref|XP_611556.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812051|ref|XP_611556.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-93, - strand, RNAz p=0.816013
               

               
               800-1104, + strand, RNAz p=0.998373
               

               
               816-920, - strand, RNAz p=0.963387

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-93, - strand, RNAz p=0.816013
               

               
               800-1104, + strand, RNAz p=0.998373
               

               
               816-920, - strand, RNAz p=0.963387

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1455, gnl|bosTau2|chr7 (20523502-20522045)
               

               
               1-1455, gnl|Hg17|chr3 (47603857-47602387)
               

               
               1-1455, gnl|Mm7|chr9 (109935595-109937032)
               


               
               800-1339, gnl|bosTau2|chr11 (46584164-46583625)
               

               
               800-1339, gnl|Hg17|chr3 (47603063-47602514)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1455, gnl|bosTau2|chr7 (20523502-20522045)
               

               
               1-1455, gnl|Hg17|chr3 (47603857-47602387)
               

               
               1-1455, gnl|Mm7|chr9 (109935595-109937032)
               


               
               800-1339, gnl|bosTau2|chr11 (46584164-46583625)
               

               
               800-1339, gnl|Hg17|chr3 (47603063-47602514)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-93, - strand, RNAz p=0.816013
	800-1104, + strand, RNAz p=0.998373
	816-920, - strand, RNAz p=0.963387

	1-1455, gnl\|bosTau2\|chr7 (20523502-20522045)
	1-1455, gnl\|Hg17\|chr3 (47603857-47602387)
	1-1455, gnl\|Mm7\|chr9 (109935595-109937032)

	800-1339, gnl\|bosTau2\|chr11 (46584164-46583625)
	800-1339, gnl\|Hg17\|chr3 (47603063-47602514)

	fty (0.351679)
	nbm (0.198649)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	eli (0.151814)
	lnt (0.142308)
	pla (0.133672)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)