Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N18.5

Sequence:


               
               AAAAGCGTGGGTTGTTTTCCCATATACCTATCTATGCCGGTGATTTTACATTCTTTTCTT
TTCTCTTTTAATATTAAAAGCAAACAAACAAACCTTAACCCTGTTACATTGTGTCCTTTT
GAAGGTACTATGGTCTGGGAAACAGAAGTCCGCAGGGCCTCCCTACGTCTTTGGAGCTTA
AACCCCTTGTATATTTGCCCCTTTTCAATAAACACCCCCACGTTGATAGCACAGAGGAGC
CCGGCATGCACTGTATGGGAAAGCAGTCCACCTTGTTACAGTTTTAAATTTCTTGCTATC
TTAGCATTCAGATACCAATGGCTTGCTAAAAGAAAATAAGAAATGTAATGTCTTTTTATT
CTCAGGTCAATCGCTCACACTTTGTTCTGTTTTCAGAATCATTGTTTTATATATATTATG
TTTTCAGTTTTTTTTTTGTTTGTTTTGTTTTTATTTTCGTTCCAGAGAAGATTTTGTTTT
GTTATTTTAAAAACGGGCAGAAAGTATTCGAGAAAAACAATGTGAACTGCTTTAGCTTTC
TGGGGATTTTAAGGATAGCTTTTCTGCTGAAGCCAATTTCAAGGGGAAAAGTTAAGCACT
CCCACTTTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCGTGGGTTGTTTTCCCATATACCTATCTATGCCGGTGATTTTACATTCTTTTCTT
TTCTCTTTTAATATTAAAAGCAAACAAACAAACCTTAACCCTGTTACATTGTGTCCTTTT
GAAGGTACTATGGTCTGGGAAACAGAAGTCCGCAGGGCCTCCCTACGTCTTTGGAGCTTA
AACCCCTTGTATATTTGCCCCTTTTCAATAAACACCCCCACGTTGATAGCACAGAGGAGC
CCGGCATGCACTGTATGGGAAAGCAGTCCACCTTGTTACAGTTTTAAATTTCTTGCTATC
TTAGCATTCAGATACCAATGGCTTGCTAAAAGAAAATAAGAAATGTAATGTCTTTTTATT
CTCAGGTCAATCGCTCACACTTTGTTCTGTTTTCAGAATCATTGTTTTATATATATTATG
TTTTCAGTTTTTTTTTTGTTTGTTTTGTTTTTATTTTCGTTCCAGAGAAGATTTTGTTTT
GTTATTTTAAAAACGGGCAGAAAGTATTCGAGAAAAACAATGTGAACTGCTTTAGCTTTC
TGGGGATTTTAAGGATAGCTTTTCTGCTGAAGCCAATTTCAAGGGGAAAAGTTAAGCACT
CCCACTTTCAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr18 (33591790-33592413)
               

               
               1-612, gnl|Hg17|chr16 (71378428-71377828)
               

               
               1-612, gnl|Mm7|chr8 (107557411-107558034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr18 (33591790-33592413)
               

               
               1-612, gnl|Hg17|chr16 (71378428-71377828)
               

               
               1-612, gnl|Mm7|chr8 (107557411-107558034)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pro (0.512033)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	1-612, gnl\|bosTau2\|chr18 (33591790-33592413)
	1-612, gnl\|Hg17\|chr16 (71378428-71377828)
	1-612, gnl\|Mm7\|chr8 (107557411-107558034)