Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N20.3

Sequence:


               
               GCACTTGAAAATGATATTTTTTATTTTAAAGACTTACCAATCTGATATAGTTTAGCCTGG
GCTCGTGGTGGAGCTCTGGCATTTCTCGCTTCCTCTCAGTTTGCCTGCAGAGGTAGACGT
GGAAGGAGAGAGGAGTCTGCATTTCCTGTTAGAGAGGAATCAGTGCTCGTCTTCTTATTA
TAAGCCCCTTTCTTTTGTGAAGTTGAAGCTGCACTGACAAGCCAGGGTTGTGAATGTGTT
CAGACTCAGCAAGTGGGCCTCACCAGGTCATTAGGATGCTGACCCAGATTTTCCCACTGG
GACTGATAGATCATTTTCCCATGATCTGCGGCTCCAGTAGGGGTCTTCCTTCGTCCACCT
CCACCTCCTGGTGTAGAAGTTACACTGCTGCACCTGAGGTCAGTGTTTCCAAGTAAGGTG
AAGCCAGTGTTTTGACCTGGCTCTGAGCACAAGTGAGCACAAATACCAACATTTTCACAC
ACTCCATAGTGATTTCCTCCATCTGGTGATGACTGTTTACAGGTGGCTGGTCTGGTCCTG
TGGTGTTGGATCCTTTCCAGTAACACCATGAAAAGAAGAGACACTTCCCAAGGATATCAT
GAAAAGGGTGTAGGACAGATGCTATGGACTGTGGGCCACAGGGTCCAGCCCAGCTCTGAG
CATTAGCTGTCCTGGGGTGTCTCCCCTCTTAGATAACACAAGGAGCCTTCTCTTCTGGGT
TTCATCTGAGAGCAAAGCCAGGATGAGAGCTGAAGACCAGCCTTTTGACTTGGCCACAGA
GATGTGAGTAGGTAGGAATTCTGATCCTCGTTCCCAATTTATTGTTTCCCAGAAAATCTT
ATTTCCTTCTATTTATGGAACGCATGTCTTTTGTGTTAAGAAACCAAAGAAAAATAAAGA
GTACGCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTTGAAAATGATATTTTTTATTTTAAAGACTTACCAATCTGATATAGTTTAGCCTGG
GCTCGTGGTGGAGCTCTGGCATTTCTCGCTTCCTCTCAGTTTGCCTGCAGAGGTAGACGT
GGAAGGAGAGAGGAGTCTGCATTTCCTGTTAGAGAGGAATCAGTGCTCGTCTTCTTATTA
TAAGCCCCTTTCTTTTGTGAAGTTGAAGCTGCACTGACAAGCCAGGGTTGTGAATGTGTT
CAGACTCAGCAAGTGGGCCTCACCAGGTCATTAGGATGCTGACCCAGATTTTCCCACTGG
GACTGATAGATCATTTTCCCATGATCTGCGGCTCCAGTAGGGGTCTTCCTTCGTCCACCT
CCACCTCCTGGTGTAGAAGTTACACTGCTGCACCTGAGGTCAGTGTTTCCAAGTAAGGTG
AAGCCAGTGTTTTGACCTGGCTCTGAGCACAAGTGAGCACAAATACCAACATTTTCACAC
ACTCCATAGTGATTTCCTCCATCTGGTGATGACTGTTTACAGGTGGCTGGTCTGGTCCTG
TGGTGTTGGATCCTTTCCAGTAACACCATGAAAAGAAGAGACACTTCCCAAGGATATCAT
GAAAAGGGTGTAGGACAGATGCTATGGACTGTGGGCCACAGGGTCCAGCCCAGCTCTGAG
CATTAGCTGTCCTGGGGTGTCTCCCCTCTTAGATAACACAAGGAGCCTTCTCTTCTGGGT
TTCATCTGAGAGCAAAGCCAGGATGAGAGCTGAAGACCAGCCTTTTGACTTGGCCACAGA
GATGTGAGTAGGTAGGAATTCTGATCCTCGTTCCCAATTTATTGTTTCCCAGAAAATCTT
ATTTCCTTCTATTTATGGAACGCATGTCTTTTGTGTTAAGAAACCAAAGAAAAATAAAGA
GTACGCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-187, - strand, RNAz p=0.998906
               

               
               610-704, + strand, RNAz p=0.878971

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-187, - strand, RNAz p=0.998906
               

               
               610-704, + strand, RNAz p=0.878971

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               76-148, + strand, RNAmicro p=0.999984

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               76-148, + strand, RNAmicro p=0.999984

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC032620, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC032620, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr22 (40263334-40262408)
               

               
               1-912, gnl|Hg17|chr3 (47362383-47363308)
               

               
               1-912, gnl|Mm7|chr9 (110124687-110123868)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr22 (40263334-40262408)
               

               
               1-912, gnl|Hg17|chr3 (47362383-47363308)
               

               
               1-912, gnl|Mm7|chr9 (110124687-110123868)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.22792)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               ecc (0.115035)

	40-187, - strand, RNAz p=0.998906
	610-704, + strand, RNAz p=0.878971

	1-912, gnl\|bosTau2\|chr22 (40263334-40262408)
	1-912, gnl\|Hg17\|chr3 (47362383-47363308)
	1-912, gnl\|Mm7\|chr9 (110124687-110123868)