Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N21.3

Sequence:


               
               CAGCAGTCCACTGGCTCAGACCGAGTGACACAGACGCCGGAGAGCTTGGATTTCCTCAAG
GTCCCTGACCAGGGCGCCGCAGGGGTCCGGAGACAAACAACCAGCCGGCCCCCCCCAGCA
GGGGGCAGACCCAAACCCCAGCCCAAGCCCAAGCCTCAGGTGCCACAGTGCAAGGCTCTG
TACGCCTATGATGCTCAGGACACAGACGAACTCAGCTTCAATGCCAATGACATTATCGAT
ATTATCAAAGAAGATCCTTCTGGCTGGTGGACGGGGCGACTACGAGGCAAACAAGGCCTG
TTCCCCAACAACTACGTGACCAAGATCTGAGGCACAAAGAGACACTGATGCATGGGACGA
AGGAGCTTCAGGCACAGACAGGGGAGGGGACATTTGGGGGCTCTCCTGATCCATAGTGAG
CAACTGCTTCTGCAAGGCCTGGAGCTATTCTGGCACCTTCCCCATGGAGGACCTTGAAAA
GCTGGGTTGGGAACAGGGAGTCACTCCTTAGCTGATCCTAAAAGGTAGCCTATTCACAGG
AACCCAGGAGGGCAAACAAGCACCCACTAAGATTTATTTATTCTATTTAAACCTGGTGAG
AGGACAGGTGAGGTCCACTCAGACCTCGCTGACTCTATCAAAACAGTACCTGCTCGCTCA
CCAGGCCCAGGGAATAGCTGTAGGCGGCCGCTGACAAGTGCCTTTAGTTAAAGAGCACAT
TTCTTTGATCTCTTGTTTCCTTACCTGACATACACATTCCTCTGCCACCTTCCCTCAGGG
AGGACTCACTCTGTGCGGGGGGGGGGGGCTTGGCGTGAGTGGGCACTTCCCATGCAAATG
CCAAGAGCCCGCTGAGCCCACAGGTGCAACGGGCACTGGTTTACACTTTGCCTGGACCAG
CAGGGCTGCCGGGCTACGGGGCTGCAGGCACTGGGGCTGGGCTGTTGGCCAGGCTTTCTC
TGGGTCTTCAGTTGGAATGTGGCTGGCCCATGTTGGTTTTTGTGTTTAATGCTGTACCTA
TTACAAGAAAGATCTCTTTTTTTTCAAGCTGTACATTTATAAAAACAGATCATATACTGT
ACATATAAAAATCTCAAGAAGGTAGAAACATGTAAGAATGTACTAAGTAGTATTCCACTG
TACTTATTCATAAGATAGGTTTTATTACAAAACTCACACCAGGTACTTACAAAAGTGCAC
TACTCCTTTTCAGCTATAGAATCAGTGTTAACTGCTTTCTAGCTCAGGCCCTGCCAACTC
TTCCCAACCCTCTCCCATAGGTAATTTTCTTTTCTGTGCTGCCCCCCCAAGTCCCCTCCC
CCTGTCTCCTAAATAAATAAAGGAATCAGTGAACCACAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGTCCACTGGCTCAGACCGAGTGACACAGACGCCGGAGAGCTTGGATTTCCTCAAG
GTCCCTGACCAGGGCGCCGCAGGGGTCCGGAGACAAACAACCAGCCGGCCCCCCCCAGCA
GGGGGCAGACCCAAACCCCAGCCCAAGCCCAAGCCTCAGGTGCCACAGTGCAAGGCTCTG
TACGCCTATGATGCTCAGGACACAGACGAACTCAGCTTCAATGCCAATGACATTATCGAT
ATTATCAAAGAAGATCCTTCTGGCTGGTGGACGGGGCGACTACGAGGCAAACAAGGCCTG
TTCCCCAACAACTACGTGACCAAGATCTGAGGCACAAAGAGACACTGATGCATGGGACGA
AGGAGCTTCAGGCACAGACAGGGGAGGGGACATTTGGGGGCTCTCCTGATCCATAGTGAG
CAACTGCTTCTGCAAGGCCTGGAGCTATTCTGGCACCTTCCCCATGGAGGACCTTGAAAA
GCTGGGTTGGGAACAGGGAGTCACTCCTTAGCTGATCCTAAAAGGTAGCCTATTCACAGG
AACCCAGGAGGGCAAACAAGCACCCACTAAGATTTATTTATTCTATTTAAACCTGGTGAG
AGGACAGGTGAGGTCCACTCAGACCTCGCTGACTCTATCAAAACAGTACCTGCTCGCTCA
CCAGGCCCAGGGAATAGCTGTAGGCGGCCGCTGACAAGTGCCTTTAGTTAAAGAGCACAT
TTCTTTGATCTCTTGTTTCCTTACCTGACATACACATTCCTCTGCCACCTTCCCTCAGGG
AGGACTCACTCTGTGCGGGGGGGGGGGGCTTGGCGTGAGTGGGCACTTCCCATGCAAATG
CCAAGAGCCCGCTGAGCCCACAGGTGCAACGGGCACTGGTTTACACTTTGCCTGGACCAG
CAGGGCTGCCGGGCTACGGGGCTGCAGGCACTGGGGCTGGGCTGTTGGCCAGGCTTTCTC
TGGGTCTTCAGTTGGAATGTGGCTGGCCCATGTTGGTTTTTGTGTTTAATGCTGTACCTA
TTACAAGAAAGATCTCTTTTTTTTCAAGCTGTACATTTATAAAAACAGATCATATACTGT
ACATATAAAAATCTCAAGAAGGTAGAAACATGTAAGAATGTACTAAGTAGTATTCCACTG
TACTTATTCATAAGATAGGTTTTATTACAAAACTCACACCAGGTACTTACAAAAGTGCAC
TACTCCTTTTCAGCTATAGAATCAGTGTTAACTGCTTTCTAGCTCAGGCCCTGCCAACTC
TTCCCAACCCTCTCCCATAGGTAATTTTCTTTTCTGTGCTGCCCCCCCAAGTCCCCTCCC
CCTGTCTCCTAAATAAATAAAGGAATCAGTGAACCACAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               83-253, gnl|bosTau2|chr10 (37922987-37922817)
               

               
               83-253, gnl|Hg17|chr15 (57217859-57217689)
               

               
               83-253, gnl|Mm7|chr9 (70427725-70427895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-253, gnl|bosTau2|chr10 (37922987-37922817)
               

               
               83-253, gnl|Hg17|chr15 (57217859-57217689)
               

               
               83-253, gnl|Mm7|chr9 (70427725-70427895)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               che (0.136314)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               che (0.136314)
               

               
               eep (0.122564)

	83-253, gnl\|bosTau2\|chr10 (37922987-37922817)
	83-253, gnl\|Hg17\|chr15 (57217859-57217689)
	83-253, gnl\|Mm7\|chr9 (70427725-70427895)