Non-Coding RNA Search

Ss1.1-Pig4-TMW8024N23.5

Sequence:


               
               GAGCCGGGGGCGGTGGCCGCCGGGGAGGTCGAGGCCCTGGGTCCGACTCCGAGCTGGAGC
GGGGTGCCGGCGGCCCGCCGACCCGCCGGTGTTTGTGTGTCTGTGCCCACCCAGGGGGAC
ATGGAGAGCTGTCTGGTGGCCGCGGCGCTGAACGGGGTGGACCGACGCTCCCTGCAGCGC
TCGGCTAGGCTGGCTCGGGAAGTGCTGGAGCGAGCCAGAAGGAGGGCCGTGGACTGGCGT
TCGGTGGAGCTTCCCAAAGGCAGCGTGGGGGTTATTTCGCGGGAGCTGCCCTGCCGGGAA
AGAGGGCTGGCAGCCGGCCCCCAGCGCCTGCTGCCGGGAGAGAGAGAAGAAAGACTCCCC
ACCCTCAGTGCTTCCTTCAGAACAATGGCAGAATTCATGGACTATACCTCAAGTCAGTGT
GGGAAATACTGTTCATCGCTGCCCGAGGAAGGAGGGTCAGCTCACGCCTATCGTTACCAC
AGAGGCAAGTCGGAGCTGCGCCTGGGCCCGGACCCGGGGAGTGGCCAGAGAAACCCCGCC
TCCCTTGGTGTCAGAGGCAGCTGTCAGGCATCGGAGTGTGTTCTGGGGGTGTCCCGGCCG
GCCGAGCCTGTCTCTAAGGACCTCTACATAGAAGTGTACCCAGGGACCTATTCCGTCACC
GTGGGCGCAGACGACCTGACCAGGAAGACCCACGTGGTAGCGGTCGATTCGGGACAAAGT
GTGGACTTGGTCTTCCCTGTGTGACGCAGGCCGTTCCCCTTGCTGAAGGACCAAGAAGAC
GAAAGCCATTGGATGCTCTCTTAGTGTTTACCGGGAACCCCGCGCTGGGCCGGCCTTCCG
GGAGCTGGAGCTCATCTCTCTCAGCGCCTGTCTTACCTCGAAAGTCCCTCACCCTCTCTT
GCCCGAAAGCCGCAAAGTAATGATGCTTGTCTGAAGAGTTTTTACTGCTTGCTTTCCGAG
TAAAGCCTAATTATGATAATAAAGGGAGAGATTTGAAGTGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCGGGGGCGGTGGCCGCCGGGGAGGTCGAGGCCCTGGGTCCGACTCCGAGCTGGAGC
GGGGTGCCGGCGGCCCGCCGACCCGCCGGTGTTTGTGTGTCTGTGCCCACCCAGGGGGAC
ATGGAGAGCTGTCTGGTGGCCGCGGCGCTGAACGGGGTGGACCGACGCTCCCTGCAGCGC
TCGGCTAGGCTGGCTCGGGAAGTGCTGGAGCGAGCCAGAAGGAGGGCCGTGGACTGGCGT
TCGGTGGAGCTTCCCAAAGGCAGCGTGGGGGTTATTTCGCGGGAGCTGCCCTGCCGGGAA
AGAGGGCTGGCAGCCGGCCCCCAGCGCCTGCTGCCGGGAGAGAGAGAAGAAAGACTCCCC
ACCCTCAGTGCTTCCTTCAGAACAATGGCAGAATTCATGGACTATACCTCAAGTCAGTGT
GGGAAATACTGTTCATCGCTGCCCGAGGAAGGAGGGTCAGCTCACGCCTATCGTTACCAC
AGAGGCAAGTCGGAGCTGCGCCTGGGCCCGGACCCGGGGAGTGGCCAGAGAAACCCCGCC
TCCCTTGGTGTCAGAGGCAGCTGTCAGGCATCGGAGTGTGTTCTGGGGGTGTCCCGGCCG
GCCGAGCCTGTCTCTAAGGACCTCTACATAGAAGTGTACCCAGGGACCTATTCCGTCACC
GTGGGCGCAGACGACCTGACCAGGAAGACCCACGTGGTAGCGGTCGATTCGGGACAAAGT
GTGGACTTGGTCTTCCCTGTGTGACGCAGGCCGTTCCCCTTGCTGAAGGACCAAGAAGAC
GAAAGCCATTGGATGCTCTCTTAGTGTTTACCGGGAACCCCGCGCTGGGCCGGCCTTCCG
GGAGCTGGAGCTCATCTCTCTCAGCGCCTGTCTTACCTCGAAAGTCCCTCACCCTCTCTT
GCCCGAAAGCCGCAAAGTAATGATGCTTGTCTGAAGAGTTTTTACTGCTTGCTTTCCGAG
TAAAGCCTAATTATGATAATAAAGGGAGAGATTTGAAGTGAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               BCA3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               BCA3_HUMAN

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               2-357, gnl|bosTau2|chr15 (30443662-30444013)
               

               
               2-357, gnl|Hg17|chr11 (8889452-8889807)
               

               
               2-357, gnl|Mm7|chr7 (105619143-105619453)
               


               
               600-754, gnl|bosTau2|chr15 (30450606-30450760)
               

               
               600-754, gnl|canFam2|chr21 (35475163-35475009)
               

               
               600-754, gnl|dasNov1|scaffold_225320 (1853-2018)
               

               
               600-754, gnl|echTel1|scaffold_188774 (2863-3032)
               

               
               600-754, gnl|Hg17|chr11 (8897459-8897613)
               

               
               600-754, gnl|hg17|chr6 (90883101-90883260)
               

               
               600-754, gnl|loxAfr1|scaffold_17825 (5396-5225)
               

               
               600-754, gnl|mm7|chr7 (105627200-105627041)
               

               
               600-754, gnl|Mm7|chr7 (105627020-105627174)
               

               
               600-754, gnl|panTro1|chr5 (92585869-92586028)
               

               
               600-754, gnl|rheMac2|chr4 (85996972-85997129)
               

               
               600-754, gnl|rn3|chr15 (79199063-79199218)
               


               
               827-1007, gnl|bosTau2|chr15 (30450861-30451043)
               

               
               827-1007, gnl|Hg17|chr11 (8897710-8898207)
               

               
               827-1007, gnl|Mm7|chr7 (105627276-105627460)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-357, gnl|bosTau2|chr15 (30443662-30444013)
               

               
               2-357, gnl|Hg17|chr11 (8889452-8889807)
               

               
               2-357, gnl|Mm7|chr7 (105619143-105619453)
               


               
               600-754, gnl|bosTau2|chr15 (30450606-30450760)
               

               
               600-754, gnl|canFam2|chr21 (35475163-35475009)
               

               
               600-754, gnl|dasNov1|scaffold_225320 (1853-2018)
               

               
               600-754, gnl|echTel1|scaffold_188774 (2863-3032)
               

               
               600-754, gnl|Hg17|chr11 (8897459-8897613)
               

               
               600-754, gnl|hg17|chr6 (90883101-90883260)
               

               
               600-754, gnl|loxAfr1|scaffold_17825 (5396-5225)
               

               
               600-754, gnl|mm7|chr7 (105627200-105627041)
               

               
               600-754, gnl|Mm7|chr7 (105627020-105627174)
               

               
               600-754, gnl|panTro1|chr5 (92585869-92586028)
               

               
               600-754, gnl|rheMac2|chr4 (85996972-85997129)
               

               
               600-754, gnl|rn3|chr15 (79199063-79199218)
               


               
               827-1007, gnl|bosTau2|chr15 (30450861-30451043)
               

               
               827-1007, gnl|Hg17|chr11 (8897710-8898207)
               

               
               827-1007, gnl|Mm7|chr7 (105627276-105627460)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cje (0.330469)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	2-357, gnl\|bosTau2\|chr15 (30443662-30444013)
	2-357, gnl\|Hg17\|chr11 (8889452-8889807)
	2-357, gnl\|Mm7\|chr7 (105619143-105619453)

	600-754, gnl\|bosTau2\|chr15 (30450606-30450760)
	600-754, gnl\|canFam2\|chr21 (35475163-35475009)
	600-754, gnl\|dasNov1\|scaffold_225320 (1853-2018)
	600-754, gnl\|echTel1\|scaffold_188774 (2863-3032)
	600-754, gnl\|Hg17\|chr11 (8897459-8897613)
	600-754, gnl\|hg17\|chr6 (90883101-90883260)
	600-754, gnl\|loxAfr1\|scaffold_17825 (5396-5225)
	600-754, gnl\|mm7\|chr7 (105627200-105627041)
	600-754, gnl\|Mm7\|chr7 (105627020-105627174)
	600-754, gnl\|panTro1\|chr5 (92585869-92586028)
	600-754, gnl\|rheMac2\|chr4 (85996972-85997129)
	600-754, gnl\|rn3\|chr15 (79199063-79199218)

	827-1007, gnl\|bosTau2\|chr15 (30450861-30451043)
	827-1007, gnl\|Hg17\|chr11 (8897710-8898207)
	827-1007, gnl\|Mm7\|chr7 (105627276-105627460)

	cje (0.330469)
	col (0.195008)
	nco (0.161734)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ebs (0.118301)
	eje (0.0988338)