Ss1.1-Pig4-TMW8024O05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAGCGTGAGCCCCTCAGCTCGGCCTTCAGCCGTCAGCTCAACGTCAACGCCAAACCC TTCGTGCCTAACGTCCACGCCGCGGAGTTCGTGCCGTCCTTTCTGCGCGGCCCCGGCCAG CCGCAGACCCCCCCGGCCGACGCCACCGGCATCGACGAAACCTGCCCCGGCGCGGGCGAC CCTCAAGGTAAAAGGCTGGGACGGGGGGCACCTGTGGAACATTCCAAAGAGGAACAGTTA GTGTTGCGTGAAGGTTCCAATGCAGCCGTTACCATGGAACTTTCGGAACCTGTTGTAGAA AATGGAGAGGTGGAGATGGTCTTAGAAGAGTCATGGGAGCACAATAAAGAAGTAAGTGAA GCTGAGCCGGGGGGTAGTTCCTTGGGAGATTCGGGGCCCCCAGAAGAAAGTGGCCAGGAA ATGATGGAGAAAGAGGAAATCAGAAAATCTAAATCGCTGGTCGTACCCTCAGGTGCTCCT AAAAAAGAACACGTAAATGTGGTCTTCATTGGGCATGTAGATGCCGGAAAGTCAACCATT GGAGGCCAGATAATGTTTTTGACAGGAATGGTTGACAAAAGGACACTTGAGAAATATGAA AGAGAAGCTAAGGAAAAAAACAGAGAAACTTGGTATTTGTCCTGGGCCTTAGATACCAAT CAGGAAGAACGAGACAAGGGTAAAACAGTAGAAGTGGGTCGTGCCTATTTTGAAACCGAA AAGAAACATTTCACAATTTTAGATGCCCCTGGCCACAAGAGTTTTGTCCCAAATATGATC GGTGGTGCTTCTCAAGCTGATTTGGCTGTACTGGTCATCTCTGCCAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAGCGTGAGCCCCTCAGCTCGGCCTTCAGCCGTCAGCTCAACGTCAACGCCAAACCC TTCGTGCCTAACGTCCACGCCGCGGAGTTCGTGCCGTCCTTTCTGCGCGGCCCCGGCCAG CCGCAGACCCCCCCGGCCGACGCCACCGGCATCGACGAAACCTGCCCCGGCGCGGGCGAC CCTCAAGGTAAAAGGCTGGGACGGGGGGCACCTGTGGAACATTCCAAAGAGGAACAGTTA GTGTTGCGTGAAGGTTCCAATGCAGCCGTTACCATGGAACTTTCGGAACCTGTTGTAGAA AATGGAGAGGTGGAGATGGTCTTAGAAGAGTCATGGGAGCACAATAAAGAAGTAAGTGAA GCTGAGCCGGGGGGTAGTTCCTTGGGAGATTCGGGGCCCCCAGAAGAAAGTGGCCAGGAA ATGATGGAGAAAGAGGAAATCAGAAAATCTAAATCGCTGGTCGTACCCTCAGGTGCTCCT AAAAAAGAACACGTAAATGTGGTCTTCATTGGGCATGTAGATGCCGGAAAGTCAACCATT GGAGGCCAGATAATGTTTTTGACAGGAATGGTTGACAAAAGGACACTTGAGAAATATGAA AGAGAAGCTAAGGAAAAAAACAGAGAAACTTGGTATTTGTCCTGGGCCTTAGATACCAAT CAGGAAGAACGAGACAAGGGTAAAACAGTAGAAGTGGGTCGTGCCTATTTTGAAACCGAA AAGAAACATTTCACAATTTTAGATGCCCCTGGCCACAAGAGTTTTGTCCCAAATATGATC GGTGGTGCTTCTCAAGCTGATTTGGCTGTACTGGTCATCTCTGCCAGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-157, - strand, RNAz p=0.646686 | |
| 408-523, + strand, RNAz p=0.982193 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-157, - strand, RNAz p=0.646686 | |
| 408-523, + strand, RNAz p=0.982193 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-201, gnl|bosTau2|chr25 (9928362-9928159) | |
| 1-201, gnl|Hg17|chr16 (11916913-11916713) | |
| 1-201, gnl|Mm7|chr16 (10933034-10932831) | |
| 295-523, gnl|bosTau2|chr25 (9915352-9915121) | |
| 295-523, gnl|Hg17|chr16 (11898144-11897913) | |
| 295-523, gnl|Mm7|chr16 (10918302-10918071) | |
| 632-815, gnl|bosTau2|chr25 (9910856-9910673) | |
| 632-815, gnl|canFam2|chr6 (33993396-33993261) | |
| 632-815, gnl|danRer3|chr3 (32343292-32343157) | |
| 632-815, gnl|dasNov1|scaffold_6163 (37028-37163) | |
| 632-815, gnl|echTel1|scaffold_287774 (39912-40047) | |
| 632-815, gnl|fr1|chrUn (112217250-112217115) | |
| 632-815, gnl|galGal2|chr14 (2328901-2329036) | |
| 632-815, gnl|hg17|chr16 (11888924-11889059) | |
| 632-815, gnl|Hg17|chr16 (11889109-11888926) | |
| 632-815, gnl|loxAfr1|scaffold_32491 (30816-30950) | |
| 632-815, gnl|mm7|chr16 (10911730-10911865) | |
| 632-815, gnl|Mm7|chr16 (10911915-10911732) | |
| 632-815, gnl|monDom2|scaffold_17 (28224889-28225024) | |
| 632-815, gnl|oryCun1|scaffold_153053 (16821-16956) | |
| 632-815, gnl|panTro1|chr18_random (966921-967056) | |
| 632-815, gnl|rheMac2|chr20 (11959912-11960047) | |
| 632-815, gnl|rn3|chr10 (4270572-4270437) | |
| 632-815, gnl|tetNig1|chrUn_random (36675303-36675432) | |
| 632-815, gnl|xenTro1|scaffold_290 (347455-347590) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-201, gnl|bosTau2|chr25 (9928362-9928159) | |
| 1-201, gnl|Hg17|chr16 (11916913-11916713) | |
| 1-201, gnl|Mm7|chr16 (10933034-10932831) | |
| 295-523, gnl|bosTau2|chr25 (9915352-9915121) | |
| 295-523, gnl|Hg17|chr16 (11898144-11897913) | |
| 295-523, gnl|Mm7|chr16 (10918302-10918071) | |
| 632-815, gnl|bosTau2|chr25 (9910856-9910673) | |
| 632-815, gnl|canFam2|chr6 (33993396-33993261) | |
| 632-815, gnl|danRer3|chr3 (32343292-32343157) | |
| 632-815, gnl|dasNov1|scaffold_6163 (37028-37163) | |
| 632-815, gnl|echTel1|scaffold_287774 (39912-40047) | |
| 632-815, gnl|fr1|chrUn (112217250-112217115) | |
| 632-815, gnl|galGal2|chr14 (2328901-2329036) | |
| 632-815, gnl|hg17|chr16 (11888924-11889059) | |
| 632-815, gnl|Hg17|chr16 (11889109-11888926) | |
| 632-815, gnl|loxAfr1|scaffold_32491 (30816-30950) | |
| 632-815, gnl|mm7|chr16 (10911730-10911865) | |
| 632-815, gnl|Mm7|chr16 (10911915-10911732) | |
| 632-815, gnl|monDom2|scaffold_17 (28224889-28225024) | |
| 632-815, gnl|oryCun1|scaffold_153053 (16821-16956) | |
| 632-815, gnl|panTro1|chr18_random (966921-967056) | |
| 632-815, gnl|rheMac2|chr20 (11959912-11960047) | |
| 632-815, gnl|rn3|chr10 (4270572-4270437) | |
| 632-815, gnl|tetNig1|chrUn_random (36675303-36675432) | |
| 632-815, gnl|xenTro1|scaffold_290 (347455-347590) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cov (0.132153) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |