Ss1.1-Pig4-TMW8024O17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCATATTCCAGCAGCCTCCTGTCGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGC CGAGACTTCCATCACAATCAATGACATCGTGCACGTGGTAGACAGTGGTCTGCACAAGGA GGAACGCTACGACCTGAAGACCAAGGTGTCCTGCTTGGAGACTGTGTGGGTGTCACGAGC CAATGTGATCCAGCGCCGGGGCCGGGCAGGCCGCTGCCAGTCAGGCTTTGCCTATCACCT CTTCCCGAGGAGCCGGCTGGAGAAGATGGTCCCTTTCCAGGTGCCAGAAATCCTGCGCAC ACCCCTCGAGAACCTGGTGCTGCAAGCCAAGATCCACATGCCTGAGAAGACGGCAGTGGA GTTCCTCTCCAAGGCTGTGGACAGTCCAAACATCAAAGCAGTGGATGAGGCTGTGATCCT GCTCCAAGAGATTGGGGTGCTGGACCAGCGGGAGTACCTGACCACCCTGGGGCAGCGCCT GGCTCACATCTCCACCGACCCACGGTTGGCCAAGGCCATAGTGCTGGCCGCCATCTTCCG TTGCCTCCACCCGCTGCTAGTGGTTGTTTCCTGCCTCACCCGAGACCCCTTCAGCAGCAG CCTGCAGAACCGGGCGGAGGTGGACAAGGTGAAGGCGCTGTTGAGCCACGACAGTGGCAG TGACCACCTGGCCTTCGTGCGGGCTGTGTCTGGCTGGGAGGAGGTGCTGCGTTGGCAGGA CCGCAGCTCCCGGGAGAACTACCTGGAGGAAAACCTGCTCTACGCGCCCAGCCTGCGCTT CATTCATGGACTCATCAAGCAGTTCTCAGAGAACATATATGAGGCTTTCCTGGTAGGGAA GCCCTCAGACTGCACGCTGGCCTCTGCCCAGTGCAATGAGTACAGTGAAGAGGAGGAGCT GGTGAAGGGTGTACTGATGGCGGGTCTCTACCCCAACCTCATCCAGGTGAGGCAAGGCAA GGTGACCCGGCAGGGCAAGTTCAAGCCCAACAGTGTCACTTACAGGACCAAATCTGGCAA CATCTTGCTGCACAAGTCGACCATTAACAGGGAGGCCACACGACTACGGAGCCGATGGCT GACGTATTTCATGGCCGTCAAGTCCAATGGCAGCGTCTTCGTTCGGGACTCCTCCCAGGT GCACCCACTGGCTGTGCTGCTACTGACAGATGGGGACGTCCACATCCGTGATGACGGGCG CCGGGCCACCATCTCCCTCAGTGACAGTGACCTGCTAAGGCTGGAGGGCGACTCACGTAC CGTGCGGCTGCTGCGGGAGCTGCGCCGGGCCCTGGGCCGCATGGTGGAGCGGAGCCTGCG TAGTGAGCTGGCTACCCTGCCGCCCTGTGTGCAACAGGAACATGGGCAGCTGCTGGCCCT GCTGGCAGAGCTGCTGCGCGGGCCCTGTGGCAGCTTTGATGTGCGCAAGACAGCTGATGA CTGAGCCCCGTGTCTGCTGGGGCCATGTACAGAGTGAAAATGTTTATTTAAAATAAAGTT CTATTTATCCCTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCATATTCCAGCAGCCTCCTGTCGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGC CGAGACTTCCATCACAATCAATGACATCGTGCACGTGGTAGACAGTGGTCTGCACAAGGA GGAACGCTACGACCTGAAGACCAAGGTGTCCTGCTTGGAGACTGTGTGGGTGTCACGAGC CAATGTGATCCAGCGCCGGGGCCGGGCAGGCCGCTGCCAGTCAGGCTTTGCCTATCACCT CTTCCCGAGGAGCCGGCTGGAGAAGATGGTCCCTTTCCAGGTGCCAGAAATCCTGCGCAC ACCCCTCGAGAACCTGGTGCTGCAAGCCAAGATCCACATGCCTGAGAAGACGGCAGTGGA GTTCCTCTCCAAGGCTGTGGACAGTCCAAACATCAAAGCAGTGGATGAGGCTGTGATCCT GCTCCAAGAGATTGGGGTGCTGGACCAGCGGGAGTACCTGACCACCCTGGGGCAGCGCCT GGCTCACATCTCCACCGACCCACGGTTGGCCAAGGCCATAGTGCTGGCCGCCATCTTCCG TTGCCTCCACCCGCTGCTAGTGGTTGTTTCCTGCCTCACCCGAGACCCCTTCAGCAGCAG CCTGCAGAACCGGGCGGAGGTGGACAAGGTGAAGGCGCTGTTGAGCCACGACAGTGGCAG TGACCACCTGGCCTTCGTGCGGGCTGTGTCTGGCTGGGAGGAGGTGCTGCGTTGGCAGGA CCGCAGCTCCCGGGAGAACTACCTGGAGGAAAACCTGCTCTACGCGCCCAGCCTGCGCTT CATTCATGGACTCATCAAGCAGTTCTCAGAGAACATATATGAGGCTTTCCTGGTAGGGAA GCCCTCAGACTGCACGCTGGCCTCTGCCCAGTGCAATGAGTACAGTGAAGAGGAGGAGCT GGTGAAGGGTGTACTGATGGCGGGTCTCTACCCCAACCTCATCCAGGTGAGGCAAGGCAA GGTGACCCGGCAGGGCAAGTTCAAGCCCAACAGTGTCACTTACAGGACCAAATCTGGCAA CATCTTGCTGCACAAGTCGACCATTAACAGGGAGGCCACACGACTACGGAGCCGATGGCT GACGTATTTCATGGCCGTCAAGTCCAATGGCAGCGTCTTCGTTCGGGACTCCTCCCAGGT GCACCCACTGGCTGTGCTGCTACTGACAGATGGGGACGTCCACATCCGTGATGACGGGCG CCGGGCCACCATCTCCCTCAGTGACAGTGACCTGCTAAGGCTGGAGGGCGACTCACGTAC CGTGCGGCTGCTGCGGGAGCTGCGCCGGGCCCTGGGCCGCATGGTGGAGCGGAGCCTGCG TAGTGAGCTGGCTACCCTGCCGCCCTGTGTGCAACAGGAACATGGGCAGCTGCTGGCCCT GCTGGCAGAGCTGCTGCGCGGGCCCTGTGGCAGCTTTGATGTGCGCAAGACAGCTGATGA CTGAGCCCCGTGTCTGCTGGGGCCATGTACAGAGTGAAAATGTTTATTTAAAATAAAGTT CTATTTATCCCTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 788-1468, + strand, RNAz p=0.933988 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 788-1468, + strand, RNAz p=0.933988 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 141-353, gnl|bosTau2|chr22 (40650820-40651032) | |
| 141-353, gnl|Hg17|chr3 (47864669-47864881) | |
| 141-353, gnl|Mm7|chr9 (109783190-109782978) | |
| 434-630, gnl|bosTau2|chr22 (40651265-40651461) | |
| 434-630, gnl|canFam2|chr20 (44102728-44102516) | |
| 434-630, gnl|danRer3|chrNA (11529791-11529996) | |
| 434-630, gnl|fr1|chrUn (217000773-217000562) | |
| 434-630, gnl|galGal2|chr2 (302230-302021) | |
| 434-630, gnl|hg17|chr3 (47865105-47865317) | |
| 434-630, gnl|Hg17|chr3 (47865117-47865313) | |
| 434-630, gnl|mm7|chr9 (109782752-109782540) | |
| 434-630, gnl|Mm7|chr9 (109782738-109782542) | |
| 434-630, gnl|monDom2|scaffold_5 (82840992-82841232) | |
| 434-630, gnl|rheMac2|chr2 (88664229-88664017) | |
| 434-630, gnl|rn3|chr8 (114459409-114459197) | |
| 434-630, gnl|tetNig1|chr15_random (358349-358560) | |
| 434-630, gnl|xenTro1|scaffold_647 (85172-84960) | |
| 788-949, gnl|bosTau2|chr22 (40651841-40652002) | |
| 788-949, gnl|canFam2|chr20 (44102225-44101986) | |
| 788-949, gnl|fr1|chrUn (217000289-217000095) | |
| 788-949, gnl|galGal2|chr2 (301079-300845) | |
| 788-949, gnl|hg17|chr3 (47865615-47865860) | |
| 788-949, gnl|Hg17|chr3 (47865685-47865846) | |
| 788-949, gnl|mm7|chr9 (109782228-109781989) | |
| 788-949, gnl|Mm7|chr9 (109782162-109782001) | |
| 788-949, gnl|monDom2|scaffold_5 (82841618-82841962) | |
| 788-949, gnl|oryCun1|scaffold_214785 (13160-13414) | |
| 788-949, gnl|panTro1|chr2 (49342910-49343155) | |
| 788-949, gnl|rheMac2|chr2 (88663711-88663466) | |
| 788-949, gnl|rn3|chr8 (114458879-114458637) | |
| 788-949, gnl|tetNig1|chr15_random (358843-359037) | |
| 788-949, gnl|xenTro1|scaffold_647 (83010-82730) | |
| 1190-1500, gnl|bosTau2|chr22 (40652498-40652808) | |
| 1190-1500, gnl|Hg17|chr3 (47866360-47866670) | |
| 1190-1500, gnl|Mm7|chr9 (109781506-109781196) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-353, gnl|bosTau2|chr22 (40650820-40651032) | |
| 141-353, gnl|Hg17|chr3 (47864669-47864881) | |
| 141-353, gnl|Mm7|chr9 (109783190-109782978) | |
| 434-630, gnl|bosTau2|chr22 (40651265-40651461) | |
| 434-630, gnl|canFam2|chr20 (44102728-44102516) | |
| 434-630, gnl|danRer3|chrNA (11529791-11529996) | |
| 434-630, gnl|fr1|chrUn (217000773-217000562) | |
| 434-630, gnl|galGal2|chr2 (302230-302021) | |
| 434-630, gnl|hg17|chr3 (47865105-47865317) | |
| 434-630, gnl|Hg17|chr3 (47865117-47865313) | |
| 434-630, gnl|mm7|chr9 (109782752-109782540) | |
| 434-630, gnl|Mm7|chr9 (109782738-109782542) | |
| 434-630, gnl|monDom2|scaffold_5 (82840992-82841232) | |
| 434-630, gnl|rheMac2|chr2 (88664229-88664017) | |
| 434-630, gnl|rn3|chr8 (114459409-114459197) | |
| 434-630, gnl|tetNig1|chr15_random (358349-358560) | |
| 434-630, gnl|xenTro1|scaffold_647 (85172-84960) | |
| 788-949, gnl|bosTau2|chr22 (40651841-40652002) | |
| 788-949, gnl|canFam2|chr20 (44102225-44101986) | |
| 788-949, gnl|fr1|chrUn (217000289-217000095) | |
| 788-949, gnl|galGal2|chr2 (301079-300845) | |
| 788-949, gnl|hg17|chr3 (47865615-47865860) | |
| 788-949, gnl|Hg17|chr3 (47865685-47865846) | |
| 788-949, gnl|mm7|chr9 (109782228-109781989) | |
| 788-949, gnl|Mm7|chr9 (109782162-109782001) | |
| 788-949, gnl|monDom2|scaffold_5 (82841618-82841962) | |
| 788-949, gnl|oryCun1|scaffold_214785 (13160-13414) | |
| 788-949, gnl|panTro1|chr2 (49342910-49343155) | |
| 788-949, gnl|rheMac2|chr2 (88663711-88663466) | |
| 788-949, gnl|rn3|chr8 (114458879-114458637) | |
| 788-949, gnl|tetNig1|chr15_random (358843-359037) | |
| 788-949, gnl|xenTro1|scaffold_647 (83010-82730) | |
| 1190-1500, gnl|bosTau2|chr22 (40652498-40652808) | |
| 1190-1500, gnl|Hg17|chr3 (47866360-47866670) | |
| 1190-1500, gnl|Mm7|chr9 (109781506-109781196) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| duo (0.345602) | |
| pty (0.285429) | |
| ecc (0.23007) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| pty (0.285429) | |
| ecc (0.23007) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eru (0.120048) |