Non-Coding RNA Search

Ss1.1-Pig4-TMW8024O21.5

Sequence:


               
               GCGGTCGGAATTTGGGGAAGCTAGCGGTACCACCTGTCTCTGGAAGCAAATGGTGGATTA
AGGGAGGTGGCGGGAAGCCGGTATTTGGTCGAAGTCGTCACCCTCATGGTCGCTAGGTTT
TTCACAATCAAAATTAACCAGCAAAATAAGCCAAGATGTCTGTTGATCCAATGACCTATG
AGGCCCAGTTCTTTGGCTTCACACCGCAAACTTGCATGCTTAGGATCTACATTGCATTTC
AAGACTACCTGTTTGAAGTGATGCAGGCTGTTGAACAGGTTGTTCTGAAGAAGCTGGATG
GCATCCCAGACTGTGCAGTTAGCCCAGTCCAGATTCGTAAGTGCACGGAAAAGTTTCTTT
GCTTCATGAAAGGACGTTTTGATAACCTTTTTGGCAAGATGGAGCAGCTGTTTTTACAGT
TGATTTTGCGTATTCCCCCAAACATCTTGCTTCCGGAAGATAAATCTCAGGAGCTGCATC
CTTGTAGTGAGGAAGAATTCCACCTTCTCCAAAAAGAAATTGAACAGTTACAGGAGAAGT
ATAAGACTGAATTATGCACCAAGCAGGCCCTTCTTGCAGAACTAGAAGAGCAAAAAATTG
TTCAGGCCAAACTCAAACAAACATTGTCTTTGTTTGATGAGCTTGAAAATATTGGCAGAG
ACCATGGGACTAGTGATTTTAGGGAAAGCTTGGTATTCCTGGTCCAGAACTCCAGAAAAC
TACAGAATATTAGAGACAATGTGGAAAAGGAAGGCAAAAGACTGAAAATAACTTAATTTC
TCAATAGTAAAAGGAGCTTGTCAGAAAGTGGAATGTTAAGGGATTTATATCAATAACTAT
TCTTATCATAGTGAACTGTTTATTTGGGGGGGATTTTCCTTCACTCTTTCTTGTATTTCA
CATCCTCCTCTTTTTTGGTTCACTCTCCTGAGGCATCTGTGCACCACCCTGAACTAATCT
TTGAAGCATCTGTGCAGAGAGGCCTCTAAATGGTGGGAAGGGATTCTTAGTTCAATAAAA
AACTCATTTGGTGGCATGATCGAAGAAGCAAAGCCATCCCTGGCCATTCAGAGACACTTG
TAAAAGTTGTGCCTTGGTCATGAGTCTTTATAATCTTGATCTTTTTGACTTATTCTTTGG
ATGAGACCAAATGAAAAAAGGTTAAGTGGGTACCTTATTAGCCAGCCACTATACTTGGTA
CAGCCAACATGGACTGCTTATTCCTGCCCAATAACTCTTCTCACTAGTTGAAGCAAGTAG
CAGAAAAAAAACAACCATGACCTTTAGAAAGAAGAAAAAAGTTGCTTTGTTTCTAAAATA
AATTCTTTCCATGACCAAGGCCTTGGTGATGGTAGCTTACTGTATTGGAGCCCAGCTGTG
GAAGACACTGAACAGAAAGGAAGCAGTCTCACTGGCATGGAAAAAGCCTTGAACACACCC
AGTAGCAAAGTTTATATTAACTATTAGTTATTTATACCATTTTTTTTTCATACTTCAGTT
AGTTTTGGAATCTGTCCTGTACCTAATATTTAATGAACTTATTTATTCACACTCATAAGC
GTCAAGTATTTAATACTCAGTGATAAATTTTAGCTGTGTCTTTTGCTTAAATTCAGTGGA
GTCTAATATTTCCTTTTGTAGCTAATCCATGTAAAATGTTAGATCCTTCAAGGAAGAGGG
AAAAATAGCAATGGTTGCCTTCCACATCTTCCTAAAGAACAGAATTTGGAGTTTCTCCTT
TATGTAGAAGTGTAACTTCAGGCATTAATATTTGTGGAGTTCCCTTTGTGGCACAGCGGA
AACAGACCTGACTAGGATCCATGAGGACGCAGGTTTGATCCCTGGCCTCGCTCAGTAGGT
TAACAATCTGGTGTTGCTGTGGCTGTCGTGTAGGCTGGTGGCTACAGCTCCGATTTGACC
TCTATCCTGGGAACCTCTGTATGTCTCAAGTGCAGCCGTAAAAAGCAAAAAAAAATTTTT
TTTTTCAATTAAATATCAGTTTAGGAAACCTGTGTTTACCTGGAATATGTTTATTATGAA
AGAGTCCTTTTTTTTCTAGCCTTCTACATTAAATGTGTATATATTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTCGGAATTTGGGGAAGCTAGCGGTACCACCTGTCTCTGGAAGCAAATGGTGGATTA
AGGGAGGTGGCGGGAAGCCGGTATTTGGTCGAAGTCGTCACCCTCATGGTCGCTAGGTTT
TTCACAATCAAAATTAACCAGCAAAATAAGCCAAGATGTCTGTTGATCCAATGACCTATG
AGGCCCAGTTCTTTGGCTTCACACCGCAAACTTGCATGCTTAGGATCTACATTGCATTTC
AAGACTACCTGTTTGAAGTGATGCAGGCTGTTGAACAGGTTGTTCTGAAGAAGCTGGATG
GCATCCCAGACTGTGCAGTTAGCCCAGTCCAGATTCGTAAGTGCACGGAAAAGTTTCTTT
GCTTCATGAAAGGACGTTTTGATAACCTTTTTGGCAAGATGGAGCAGCTGTTTTTACAGT
TGATTTTGCGTATTCCCCCAAACATCTTGCTTCCGGAAGATAAATCTCAGGAGCTGCATC
CTTGTAGTGAGGAAGAATTCCACCTTCTCCAAAAAGAAATTGAACAGTTACAGGAGAAGT
ATAAGACTGAATTATGCACCAAGCAGGCCCTTCTTGCAGAACTAGAAGAGCAAAAAATTG
TTCAGGCCAAACTCAAACAAACATTGTCTTTGTTTGATGAGCTTGAAAATATTGGCAGAG
ACCATGGGACTAGTGATTTTAGGGAAAGCTTGGTATTCCTGGTCCAGAACTCCAGAAAAC
TACAGAATATTAGAGACAATGTGGAAAAGGAAGGCAAAAGACTGAAAATAACTTAATTTC
TCAATAGTAAAAGGAGCTTGTCAGAAAGTGGAATGTTAAGGGATTTATATCAATAACTAT
TCTTATCATAGTGAACTGTTTATTTGGGGGGGATTTTCCTTCACTCTTTCTTGTATTTCA
CATCCTCCTCTTTTTTGGTTCACTCTCCTGAGGCATCTGTGCACCACCCTGAACTAATCT
TTGAAGCATCTGTGCAGAGAGGCCTCTAAATGGTGGGAAGGGATTCTTAGTTCAATAAAA
AACTCATTTGGTGGCATGATCGAAGAAGCAAAGCCATCCCTGGCCATTCAGAGACACTTG
TAAAAGTTGTGCCTTGGTCATGAGTCTTTATAATCTTGATCTTTTTGACTTATTCTTTGG
ATGAGACCAAATGAAAAAAGGTTAAGTGGGTACCTTATTAGCCAGCCACTATACTTGGTA
CAGCCAACATGGACTGCTTATTCCTGCCCAATAACTCTTCTCACTAGTTGAAGCAAGTAG
CAGAAAAAAAACAACCATGACCTTTAGAAAGAAGAAAAAAGTTGCTTTGTTTCTAAAATA
AATTCTTTCCATGACCAAGGCCTTGGTGATGGTAGCTTACTGTATTGGAGCCCAGCTGTG
GAAGACACTGAACAGAAAGGAAGCAGTCTCACTGGCATGGAAAAAGCCTTGAACACACCC
AGTAGCAAAGTTTATATTAACTATTAGTTATTTATACCATTTTTTTTTCATACTTCAGTT
AGTTTTGGAATCTGTCCTGTACCTAATATTTAATGAACTTATTTATTCACACTCATAAGC
GTCAAGTATTTAATACTCAGTGATAAATTTTAGCTGTGTCTTTTGCTTAAATTCAGTGGA
GTCTAATATTTCCTTTTGTAGCTAATCCATGTAAAATGTTAGATCCTTCAAGGAAGAGGG
AAAAATAGCAATGGTTGCCTTCCACATCTTCCTAAAGAACAGAATTTGGAGTTTCTCCTT
TATGTAGAAGTGTAACTTCAGGCATTAATATTTGTGGAGTTCCCTTTGTGGCACAGCGGA
AACAGACCTGACTAGGATCCATGAGGACGCAGGTTTGATCCCTGGCCTCGCTCAGTAGGT
TAACAATCTGGTGTTGCTGTGGCTGTCGTGTAGGCTGGTGGCTACAGCTCCGATTTGACC
TCTATCCTGGGAACCTCTGTATGTCTCAAGTGCAGCCGTAAAAAGCAAAAAAAAATTTTT
TTTTTCAATTAAATATCAGTTTAGGAAACCTGTGTTTACCTGGAATATGTTTATTATGAA
AGAGTCCTTTTTTTTCTAGCCTTCTACATTAAATGTGTATATATTTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|59857805|gb|AAX08737.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|59857805|gb|AAX08737.1|

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               136-1698, gnl|bosTau2|chr19 (18587829-18589393)
               

               
               136-1698, gnl|Hg17|chr17 (5332904-5334658)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-1698, gnl|bosTau2|chr19 (18587829-18589393)
               

               
               136-1698, gnl|Hg17|chr17 (5332904-5334658)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               liv (0.438853)
               

               
               cty (0.31224)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               cty (0.31224)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	136-1698, gnl\|bosTau2\|chr19 (18587829-18589393)
	136-1698, gnl\|Hg17\|chr17 (5332904-5334658)

	liv (0.438853)
	cty (0.31224)
	gul (0.177588)
	cut (0.169924)
	fhi (0.169578)
	lun (0.150489)
	bfe (0.149858)
	spl (0.143184)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)
	jej (0.0989218)