Non-Coding RNA Search

Ss1.1-Pig4-TMW8024P11.5

Sequence:


               
               GCTGGAGTGAGGGTGACACCCTCCCCCCCAAAAAAATCAGGCTGGCTAGGCAGGACTTAG
GGTCAAATTGGGCAGCTATGGGGCTCCAGACTAGGAGTGCCCCAGGCTTCAGAGCCCTCT
GATCCCCAAGGCCCAGAAGAACCTGGGGCCTTCGAGGTAAGAAAAGCCAGGCATCTTGTA
TCACCCCTTTGGGGACCCCCTGAGAGGAGGGGCTGGTCAAAGGGGAACACTGGGCGAGGT
GGGTTCAAGGGTAGATGTGAGACTCATCCTTCTTCAGAGCTCTCCAGAAAGCGGCCAAGG
AGTCCTGATCTGCCCTGAAGGACCACACTGGGGCTGGAGACGGGGAAGCAGGCTGGTAGC
TATTTGCAAGCCTGCCAGAGGGGGCGCCGGAAGGCAAAGCCCAGCCCCAGTCGGGCTGGA
GCCTCTCCCAGGCCCCACCCACAACCGCCCACAACAGGTGCTAATGGCAGTTTGGGGCTG
CTGGGCGAAGGGGTGCTGGGGAGCAGAGTAAGTCTCCACTGGGATTTTTCTCTGCCAATA
CCCCCCACCCGGCCAGGGAAGACCTTACACTTCGTCACTCCGCCCTGTACCAAGGCCACC
TTCCTGCTGTCTCTGGGAGAATTCTTGGCCTCTCCCCAGCTTCCCGTGTCCCCTCTGTCC
TCTTCATGCCTAAGGGGCCCAGACAGGACCCCCCCCCCCAAACCTGCCGAGGCCCTAGCA
ACCCCCTCTCTCCAGAAGCCCCTTCTTGCCCTCCCCAGTGGGTCCTTTGTGGAAAATCTA
TTTTGAAATCTGTAAATGTTCCTTGCAGGAGAGAGCAGAGCTAATTTATCGTGTTTATTG
CCCGTGAGCCCCTCCCCTTTTATATTATCTATCAAGAAGGAGTTTTTGTAATATAAAACA
GGACACCCACACTGATGGTTTTGCACTGGTTTTTGTGACTGTTTCTTACAAAAAGAAAAA
GGAACAAAGAATAAATAGTGATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAGTGAGGGTGACACCCTCCCCCCCAAAAAAATCAGGCTGGCTAGGCAGGACTTAG
GGTCAAATTGGGCAGCTATGGGGCTCCAGACTAGGAGTGCCCCAGGCTTCAGAGCCCTCT
GATCCCCAAGGCCCAGAAGAACCTGGGGCCTTCGAGGTAAGAAAAGCCAGGCATCTTGTA
TCACCCCTTTGGGGACCCCCTGAGAGGAGGGGCTGGTCAAAGGGGAACACTGGGCGAGGT
GGGTTCAAGGGTAGATGTGAGACTCATCCTTCTTCAGAGCTCTCCAGAAAGCGGCCAAGG
AGTCCTGATCTGCCCTGAAGGACCACACTGGGGCTGGAGACGGGGAAGCAGGCTGGTAGC
TATTTGCAAGCCTGCCAGAGGGGGCGCCGGAAGGCAAAGCCCAGCCCCAGTCGGGCTGGA
GCCTCTCCCAGGCCCCACCCACAACCGCCCACAACAGGTGCTAATGGCAGTTTGGGGCTG
CTGGGCGAAGGGGTGCTGGGGAGCAGAGTAAGTCTCCACTGGGATTTTTCTCTGCCAATA
CCCCCCACCCGGCCAGGGAAGACCTTACACTTCGTCACTCCGCCCTGTACCAAGGCCACC
TTCCTGCTGTCTCTGGGAGAATTCTTGGCCTCTCCCCAGCTTCCCGTGTCCCCTCTGTCC
TCTTCATGCCTAAGGGGCCCAGACAGGACCCCCCCCCCCAAACCTGCCGAGGCCCTAGCA
ACCCCCTCTCTCCAGAAGCCCCTTCTTGCCCTCCCCAGTGGGTCCTTTGTGGAAAATCTA
TTTTGAAATCTGTAAATGTTCCTTGCAGGAGAGAGCAGAGCTAATTTATCGTGTTTATTG
CCCGTGAGCCCCTCCCCTTTTATATTATCTATCAAGAAGGAGTTTTTGTAATATAAAACA
GGACACCCACACTGATGGTTTTGCACTGGTTTTTGTGACTGTTTCTTACAAAAAGAAAAA
GGAACAAAGAATAAATAGTGATCG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               30-497, gnl|bosTau2|chr15 (46737011-46737490)
               


               
               553-984, gnl|bosTau2|chr15 (46737784-46738203)
               

               
               553-984, gnl|Hg17|chr11 (44910046-44910546)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-497, gnl|bosTau2|chr15 (46737011-46737490)
               


               
               553-984, gnl|bosTau2|chr15 (46737784-46738203)
               

               
               553-984, gnl|Hg17|chr11 (44910046-44910546)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cov (0.264306)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	30-497, gnl\|bosTau2\|chr15 (46737011-46737490)

	553-984, gnl\|bosTau2\|chr15 (46737784-46738203)
	553-984, gnl\|Hg17\|chr11 (44910046-44910546)

	cov (0.264306)
	fbs (0.175346)
	nje (0.16592)
	cag (0.151194)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)