Non-Coding RNA Search

Ss1.1-Pig4-TMW8024P12.5

Sequence:


               
               TGAGGGGAAATAACCTGTAGCCAGTTATATTCAGGAAAAACTACTGTAAATGATGAACGT
GTTTAAAAACCTCCAATACTTGCTACTCGCCAATTCTAATTACAACAATTGGTAGGTAAT
CCTACTTGAATTTTAGCAAAAGCCCCATCTAAATGGCAGTGTAACTCAGAGCATGTCTTT
GAAGATACTAGGCGTCAACTACTACCTTCCTATTCCCCATCCCACCCACCAAAGTAAAGT
AAGAGAATATGATGTCTTCTGCAAATTTGTGGCATGCTCAAAGCTTATGATCACCTAAAG
TCAAGGGGATACTTCATGAATAATACATTTCAATGCAAATAAACAGATGGTTCACCTTTA
CTAGCTATGAGCCTGTTTTTGTATACACTGAGTTAATCTACTCAGGCTGTAGGTCCCAGC
AATGTCTAAAGTCTGGGGTTTCCTTTTCCTGTAGCCTCAGGCCCTTGGACTTACCCGGTT
TCCTATTAGAATGTCAGTCAGTTGAGCATCAGTTCTCCAGGTGTTTCTGGCCATTTGATT
CTACCTGTGGCATAATCATTTTTATACCAGCTGTTGGGAGGTTCCAAAGCCTACTTGGAT
TTCTGTAGGTAATATATAAAATGAGCAATATACCGTTCATCTGAAAATAGTAGCACACAG
CCATATATAGGATATCATTTTCTAAGGACTGTTTCTTCACATTGAGCAGAGCAGGCAGAA
ATGGTGGTTATTTAGTCTGAGTCTTTAATTTTTTAAACCTGATTTTCAGTAAAACATGCA
ATGTGGATGTTGAATAGTGTAAGAATGGTGCTGCTCCTGACAAGTTGTATGTTAACTGTT
TACATTTTATATCTGCAGAATTATTTCTCTATAACTGAATTTTTTTAAGTAAAATGTCAT
TGAAGTCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGGGAAATAACCTGTAGCCAGTTATATTCAGGAAAAACTACTGTAAATGATGAACGT
GTTTAAAAACCTCCAATACTTGCTACTCGCCAATTCTAATTACAACAATTGGTAGGTAAT
CCTACTTGAATTTTAGCAAAAGCCCCATCTAAATGGCAGTGTAACTCAGAGCATGTCTTT
GAAGATACTAGGCGTCAACTACTACCTTCCTATTCCCCATCCCACCCACCAAAGTAAAGT
AAGAGAATATGATGTCTTCTGCAAATTTGTGGCATGCTCAAAGCTTATGATCACCTAAAG
TCAAGGGGATACTTCATGAATAATACATTTCAATGCAAATAAACAGATGGTTCACCTTTA
CTAGCTATGAGCCTGTTTTTGTATACACTGAGTTAATCTACTCAGGCTGTAGGTCCCAGC
AATGTCTAAAGTCTGGGGTTTCCTTTTCCTGTAGCCTCAGGCCCTTGGACTTACCCGGTT
TCCTATTAGAATGTCAGTCAGTTGAGCATCAGTTCTCCAGGTGTTTCTGGCCATTTGATT
CTACCTGTGGCATAATCATTTTTATACCAGCTGTTGGGAGGTTCCAAAGCCTACTTGGAT
TTCTGTAGGTAATATATAAAATGAGCAATATACCGTTCATCTGAAAATAGTAGCACACAG
CCATATATAGGATATCATTTTCTAAGGACTGTTTCTTCACATTGAGCAGAGCAGGCAGAA
ATGGTGGTTATTTAGTCTGAGTCTTTAATTTTTTAAACCTGATTTTCAGTAAAACATGCA
ATGTGGATGTTGAATAGTGTAAGAATGGTGCTGCTCCTGACAAGTTGTATGTTAACTGTT
TACATTTTATATCTGCAGAATTATTTCTCTATAACTGAATTTTTTTAAGTAAAATGTCAT
TGAAGTCCCGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               376-490, + strand, RNAz p=0.995523

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-490, + strand, RNAz p=0.995523

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-907, gnl|bosTau2|chr28 (32744603-32743671)
               

               
               1-907, gnl|Hg17|chr10 (49313562-49314474)
               

               
               1-907, gnl|Mm7|chr14 (30811463-30810563)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-907, gnl|bosTau2|chr28 (32744603-32743671)
               

               
               1-907, gnl|Hg17|chr10 (49313562-49314474)
               

               
               1-907, gnl|Mm7|chr14 (30811463-30810563)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ton (0.1755)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

	1-907, gnl\|bosTau2\|chr28 (32744603-32743671)
	1-907, gnl\|Hg17\|chr10 (49313562-49314474)
	1-907, gnl\|Mm7\|chr14 (30811463-30810563)