Non-Coding RNA Search

Ss1.1-Pig4-TMW8024P15.5

Sequence:


               
               TCAACAACGAGGACGTCTTCCCCACCAACGTCGGCACGCCGTTCCCCAAGAACTTCCTGC
AGGTGGTGAAGAAGATCCTGTCGCGGCTCTTCCGCGTTTTCGTGCACGTCTACATCCACC
ACTTTGACCGCATCGCGCAGCTGGGCTCCGAGGCGCACGTCAACACCTGCTACAAGCACT
TCTACTACTTCGTCACGGAATTCGGCCTCATCGACACCAAGGAGCTGGAGCCGCTGAAAG
AAATGACTGCACGGATGTGCCACTGAGAGGCCCTCAGCCCCATGTCACTGAGGCCACTAC
TGGAGAGCCACGTCTCCAGAACAGGGACCAGTGTCTCCTAGCCCAGAGCTCTATGCCACA
GGGTGGCTTCCTCTGTTTGATCGAGAGGTACAGCAACTGTGGGCCTGCACAGACCCCAGT
CTCCTGGCCCTGCTGGGGAGATTGAACTTGAATTCCATAGTTCTGTGTGCTGTGAGCAGC
CAGGAAAACCCACTTTGTTTGTAAACCACTTGCATTTTCCAGGACACGACCCCACCCAGC
CCTGTCTCCTTTGGGCTGGGCCTGGGGGATGCTTGGCCTAGGGGGTTGCTCGACCTAAGC
CGGTGCTCAGCCTGTGGGGTGCTGGGCCCAGTGAGGCCAAGGCTGGAATCTGATCCCGCA
GTGAGCACCCTACCCGCTTGCATCCTCCCCAGACCACTTCTGTCCCTAGTTCCTCCGGGA
TTCGTCCCAAGCCCACGCACACATCCCAGGTTTCCTGTGGCCCCTTTGCATTGCATAAAA
GATTGAGTTCTTACACTTTCATTTACCACTGCCATGAGATGTTATGGGAAGAAAGTTTCT
TACATACAGATAAGTGAGCTCCCCACCCCCTGCCCCCAAGAGAAACATCCCCTGTCAAGA
ATAACAGGCTGCTGCTCTCTGGGTTTGGGGCCTTTGAATTTCCCTGAATGTTTGGAGTCA
CCTCTCGTCAGACACCTGCCAGCATCCCATCAAAACCCTGTGCGTGTGACCCTCTGTAGC
TCCGGAACCAAACCTCCCCATTGCACCTGAGGGCGTGGGGCCGCATCTGGTATCCGGGCA
CTTGCAGGGGAGAAGGGCGCCAACGCCAATACCGCACAAGTGCAATTACCACGACCTGGC
CTTGGTCCTTCCAGAAGCCACCAGGTCCGACTCCTCAGGAGACAGCCTGAATGTAGCTCC
TTTTCAGTGCAGAACTGCGACCAAATGCCATAACCACTGTGCCCCCCAGGCCACTGGCCA
GGTCGGAAAGGCGGCGGGGCTGTGGGCAGGGGTCCCATGTACCCGCCCCCACGCCCGTGG
ATGTTCCCACACGAACATCGGAATAAATCATACCGTCTCCTCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAACAACGAGGACGTCTTCCCCACCAACGTCGGCACGCCGTTCCCCAAGAACTTCCTGC
AGGTGGTGAAGAAGATCCTGTCGCGGCTCTTCCGCGTTTTCGTGCACGTCTACATCCACC
ACTTTGACCGCATCGCGCAGCTGGGCTCCGAGGCGCACGTCAACACCTGCTACAAGCACT
TCTACTACTTCGTCACGGAATTCGGCCTCATCGACACCAAGGAGCTGGAGCCGCTGAAAG
AAATGACTGCACGGATGTGCCACTGAGAGGCCCTCAGCCCCATGTCACTGAGGCCACTAC
TGGAGAGCCACGTCTCCAGAACAGGGACCAGTGTCTCCTAGCCCAGAGCTCTATGCCACA
GGGTGGCTTCCTCTGTTTGATCGAGAGGTACAGCAACTGTGGGCCTGCACAGACCCCAGT
CTCCTGGCCCTGCTGGGGAGATTGAACTTGAATTCCATAGTTCTGTGTGCTGTGAGCAGC
CAGGAAAACCCACTTTGTTTGTAAACCACTTGCATTTTCCAGGACACGACCCCACCCAGC
CCTGTCTCCTTTGGGCTGGGCCTGGGGGATGCTTGGCCTAGGGGGTTGCTCGACCTAAGC
CGGTGCTCAGCCTGTGGGGTGCTGGGCCCAGTGAGGCCAAGGCTGGAATCTGATCCCGCA
GTGAGCACCCTACCCGCTTGCATCCTCCCCAGACCACTTCTGTCCCTAGTTCCTCCGGGA
TTCGTCCCAAGCCCACGCACACATCCCAGGTTTCCTGTGGCCCCTTTGCATTGCATAAAA
GATTGAGTTCTTACACTTTCATTTACCACTGCCATGAGATGTTATGGGAAGAAAGTTTCT
TACATACAGATAAGTGAGCTCCCCACCCCCTGCCCCCAAGAGAAACATCCCCTGTCAAGA
ATAACAGGCTGCTGCTCTCTGGGTTTGGGGCCTTTGAATTTCCCTGAATGTTTGGAGTCA
CCTCTCGTCAGACACCTGCCAGCATCCCATCAAAACCCTGTGCGTGTGACCCTCTGTAGC
TCCGGAACCAAACCTCCCCATTGCACCTGAGGGCGTGGGGCCGCATCTGGTATCCGGGCA
CTTGCAGGGGAGAAGGGCGCCAACGCCAATACCGCACAAGTGCAATTACCACGACCTGGC
CTTGGTCCTTCCAGAAGCCACCAGGTCCGACTCCTCAGGAGACAGCCTGAATGTAGCTCC
TTTTCAGTGCAGAACTGCGACCAAATGCCATAACCACTGTGCCCCCCAGGCCACTGGCCA
GGTCGGAAAGGCGGCGGGGCTGTGGGCAGGGGTCCCATGTACCCGCCCCCACGCCCGTGG
ATGTTCCCACACGAACATCGGAATAAATCATACCGTCTCCTCCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21750267|dbj|BAC03752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21750267|dbj|BAC03752.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1228-1350, - strand, RNAz p=0.988916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1228-1350, - strand, RNAz p=0.988916

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               33-236, gnl|bosTau2|chr7 (18246634-18246837)
               

               
               33-236, gnl|Hg17|chr19 (2028013-2027810)
               

               
               33-236, gnl|Mm7|chr10 (80479708-80479505)
               


               
               1189-1350, gnl|bosTau2|chr7 (18249888-18250051)
               

               
               1189-1350, gnl|canFam2|chr20 (60092162-60091978)
               

               
               1189-1350, gnl|hg17|chr19 (2022143-2022384)
               

               
               1189-1350, gnl|oryCun1|scaffold_207256 (65972-65820)
               

               
               1189-1350, gnl|panTro1|chr20 (2130801-2131045)
               

               
               1189-1350, gnl|rheMac2|chr19 (1854583-1854795)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-236, gnl|bosTau2|chr7 (18246634-18246837)
               

               
               33-236, gnl|Hg17|chr19 (2028013-2027810)
               

               
               33-236, gnl|Mm7|chr10 (80479708-80479505)
               


               
               1189-1350, gnl|bosTau2|chr7 (18249888-18250051)
               

               
               1189-1350, gnl|canFam2|chr20 (60092162-60091978)
               

               
               1189-1350, gnl|hg17|chr19 (2022143-2022384)
               

               
               1189-1350, gnl|oryCun1|scaffold_207256 (65972-65820)
               

               
               1189-1350, gnl|panTro1|chr20 (2130801-2131045)
               

               
               1189-1350, gnl|rheMac2|chr19 (1854583-1854795)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ill (0.351185)
               

               
               cag (0.302389)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cag (0.302389)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	33-236, gnl\|bosTau2\|chr7 (18246634-18246837)
	33-236, gnl\|Hg17\|chr19 (2028013-2027810)
	33-236, gnl\|Mm7\|chr10 (80479708-80479505)

	1189-1350, gnl\|bosTau2\|chr7 (18249888-18250051)
	1189-1350, gnl\|canFam2\|chr20 (60092162-60091978)
	1189-1350, gnl\|hg17\|chr19 (2022143-2022384)
	1189-1350, gnl\|oryCun1\|scaffold_207256 (65972-65820)
	1189-1350, gnl\|panTro1\|chr20 (2130801-2131045)
	1189-1350, gnl\|rheMac2\|chr19 (1854583-1854795)

	ill (0.351185)
	cag (0.302389)
	ece (0.229305)
	nms (0.213858)
	eje (0.197668)
	col (0.195008)
	fty (0.17584)
	nco (0.161734)
	nca (0.136874)
	eep (0.122564)
	med (0.116252)