Non-Coding RNA Search

Ss1.1-Pig4-TMW8025A15.3

Sequence:


               
               GACAAACCTAGAAGCCGGAAGAAAACACCTGTAACAGACTCAGAAGAGAAATTAGGCATG
GATGACCTAACTAAGTTGGTACAGGAACAGAAACCTAAAGGCAGTCAACGTGGACGGAAG
AGGGGCCATACGGCTTCAGAATCAGAGGAACAGCAGTGGTCCGAGGAAAAGAGGCTCAAA
GAAGATATTTTAGAAAATGAGGATGAGCAGAATAGTCCACCAAAAAAAGGTAAAAGAGGC
CGACCACCAAAACCTCTTGGTGGAGGTACCCCCAAAGAAGAGCCAACAATGAAAACGTCT
AAAAAAGGAAGCAAAAAAAAATCTGGACCTTCAGCAGCAGAAGAAGAGGAAGAAGAAGAA
AGACAAAGTGGAAACACAGAACAGAAGTCCAAAAGTAAACAGCACCGAACTTCAAGGAGA
GCACAGCAGAGAGCAGAGTCTCCTGAAACTAGTGCAGTTGAATCCACACAATCCACACCA
CAGAAAGGACGAGGAAGACCATCAAAAACGCCATCACCATCACAACCCAAAAAAAATGTC
CGTTTGGGACGTTCCAAACAAGCAGCTACTAAAGAAAATGACTCAAGCGAAGAAGTAGAT
GTGTTTCAGGGTAGCTCCCCTGTCAATGATGATAATCCACAGGAAGAAACAGAAGAGGAG
GAAGTTTCTACAGTAAATGTGCGGCGGCGGAGTTCTAAAAGAGAAAGGCGATGAGCAAAT
GTCATTAGGAACTTTCTATGTGAAAGCTTTGAAAAAAGTTTGTTTGTCAAGCTTCAGGCT
GAGTAGAGCCTTTGATGCACACAATGGGACTGCTGAAGAATGGACAGCTGGACTTACTCT
GATGACCTCACGTTCTTGTGGTCACAGGCGTCAGCCATATGCATGCTGATGGCAGTGACT
ACGGTGTCTTGGGAAAAGGTGTGATGTGCGATGGCTGTGTAGACATACTAAAGAAGAAAC
TTGTAAATATATTTTTTCTCCCCCCCCCCTTTTTTTTTAAATGTTTCTGACTTCTAAAGT
GCTTGTATAGCTTTTATCTGCGGCTTTAAACTGACAGCACCCAACTGTTTATTGGATCTA
TTGATTTGAAAGAGTTTGTTAGTATAGATCTTAAGCAGTAATCTGTCAGTGTTTGTATTT
GTATTCTCTGCAATTTTACTGTGAAAAATTATTTTTCAACAAACAGTGTCAGTTTCTTGA
TGTCACTATTTGTTGGAGAGTCAAAATGATCTCTTTCCCTTGTGTATCTCACCTAGTGTT
TACTCCTGGGCACCCTTAATCTTCAGAGGTGCTAAATTGTCTGCCATTACACCTGAGCAA
TGCCTCTGATGGGAAGATACCACACAAATTGTGAAATAGTCCTGACGTTGTTTGATTATT
TTACACCTCAGTATTGATCCCAGAATTTTCTGGCCTTTCATGGCAATGAAAATTTTAAAA
AGAGAGAGATTTAAAATATTTTAATTTTAAAGAGTGTGTTATAAAATAATGTACTGAATT
CTTTATGCCATTTTATCATCCCTTTTCAGTTTTTATTAATCTACTGTATCAATAAAATTC
TGTAATTTGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAACCTAGAAGCCGGAAGAAAACACCTGTAACAGACTCAGAAGAGAAATTAGGCATG
GATGACCTAACTAAGTTGGTACAGGAACAGAAACCTAAAGGCAGTCAACGTGGACGGAAG
AGGGGCCATACGGCTTCAGAATCAGAGGAACAGCAGTGGTCCGAGGAAAAGAGGCTCAAA
GAAGATATTTTAGAAAATGAGGATGAGCAGAATAGTCCACCAAAAAAAGGTAAAAGAGGC
CGACCACCAAAACCTCTTGGTGGAGGTACCCCCAAAGAAGAGCCAACAATGAAAACGTCT
AAAAAAGGAAGCAAAAAAAAATCTGGACCTTCAGCAGCAGAAGAAGAGGAAGAAGAAGAA
AGACAAAGTGGAAACACAGAACAGAAGTCCAAAAGTAAACAGCACCGAACTTCAAGGAGA
GCACAGCAGAGAGCAGAGTCTCCTGAAACTAGTGCAGTTGAATCCACACAATCCACACCA
CAGAAAGGACGAGGAAGACCATCAAAAACGCCATCACCATCACAACCCAAAAAAAATGTC
CGTTTGGGACGTTCCAAACAAGCAGCTACTAAAGAAAATGACTCAAGCGAAGAAGTAGAT
GTGTTTCAGGGTAGCTCCCCTGTCAATGATGATAATCCACAGGAAGAAACAGAAGAGGAG
GAAGTTTCTACAGTAAATGTGCGGCGGCGGAGTTCTAAAAGAGAAAGGCGATGAGCAAAT
GTCATTAGGAACTTTCTATGTGAAAGCTTTGAAAAAAGTTTGTTTGTCAAGCTTCAGGCT
GAGTAGAGCCTTTGATGCACACAATGGGACTGCTGAAGAATGGACAGCTGGACTTACTCT
GATGACCTCACGTTCTTGTGGTCACAGGCGTCAGCCATATGCATGCTGATGGCAGTGACT
ACGGTGTCTTGGGAAAAGGTGTGATGTGCGATGGCTGTGTAGACATACTAAAGAAGAAAC
TTGTAAATATATTTTTTCTCCCCCCCCCCTTTTTTTTTAAATGTTTCTGACTTCTAAAGT
GCTTGTATAGCTTTTATCTGCGGCTTTAAACTGACAGCACCCAACTGTTTATTGGATCTA
TTGATTTGAAAGAGTTTGTTAGTATAGATCTTAAGCAGTAATCTGTCAGTGTTTGTATTT
GTATTCTCTGCAATTTTACTGTGAAAAATTATTTTTCAACAAACAGTGTCAGTTTCTTGA
TGTCACTATTTGTTGGAGAGTCAAAATGATCTCTTTCCCTTGTGTATCTCACCTAGTGTT
TACTCCTGGGCACCCTTAATCTTCAGAGGTGCTAAATTGTCTGCCATTACACCTGAGCAA
TGCCTCTGATGGGAAGATACCACACAAATTGTGAAATAGTCCTGACGTTGTTTGATTATT
TTACACCTCAGTATTGATCCCAGAATTTTCTGGCCTTTCATGGCAATGAAAATTTTAAAA
AGAGAGAGATTTAAAATATTTTAATTTTAAAGAGTGTGTTATAAAATAATGTACTGAATT
CTTTATGCCATTTTATCATCCCTTTTCAGTTTTTATTAATCTACTGTATCAATAAAATTC
TGTAATTTGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H5N8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H5N8_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.697732
               

               
               1022-1287, - strand, RNAz p=0.993233
               

               
               1328-1482, + strand, RNAz p=0.978059

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.697732
               

               
               1022-1287, - strand, RNAz p=0.993233
               

               
               1328-1482, + strand, RNAz p=0.978059

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015928, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015928, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-431, gnl|bosTau2|chr11 (44205938-44205508)
               

               
               1-431, gnl|Hg17|chr13 (32242268-32242698)
               

               
               1-431, gnl|Mm7|chr5 (149733672-149734102)
               


               
               540-680, gnl|bosTau2|chr11 (44202553-44202413)
               

               
               540-680, gnl|canFam2|chr25 (10396883-10396726)
               

               
               540-680, gnl|dasNov1|scaffold_20067 (6696-6859)
               

               
               540-680, gnl|echTel1|scaffold_262802 (6192-6051)
               

               
               540-680, gnl|galGal2|chr1 (166435277-166435110)
               

               
               540-680, gnl|hg17|chr13 (32245300-32245460)
               

               
               540-680, gnl|Hg17|chr13 (32245327-32245464)
               

               
               540-680, gnl|mm7|chr5 (149738634-149738795)
               

               
               540-680, gnl|Mm7|chr5 (149738659-149738799)
               

               
               540-680, gnl|monDom2|scaffold_15 (43261428-43261594)
               

               
               540-680, gnl|panTro1|chr14 (31439418-31439578)
               

               
               540-680, gnl|rheMac2|chr17 (12135958-12136121)
               

               
               540-680, gnl|rn3|chr12 (4042890-4042729)
               


               
               1022-1572, gnl|bosTau2|chr11 (44201135-44200582)
               

               
               1022-1572, gnl|Hg17|chr13 (32247488-32248042)
               

               
               1022-1572, gnl|Mm7|chr5 (149741217-149741765)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-431, gnl|bosTau2|chr11 (44205938-44205508)
               

               
               1-431, gnl|Hg17|chr13 (32242268-32242698)
               

               
               1-431, gnl|Mm7|chr5 (149733672-149734102)
               


               
               540-680, gnl|bosTau2|chr11 (44202553-44202413)
               

               
               540-680, gnl|canFam2|chr25 (10396883-10396726)
               

               
               540-680, gnl|dasNov1|scaffold_20067 (6696-6859)
               

               
               540-680, gnl|echTel1|scaffold_262802 (6192-6051)
               

               
               540-680, gnl|galGal2|chr1 (166435277-166435110)
               

               
               540-680, gnl|hg17|chr13 (32245300-32245460)
               

               
               540-680, gnl|Hg17|chr13 (32245327-32245464)
               

               
               540-680, gnl|mm7|chr5 (149738634-149738795)
               

               
               540-680, gnl|Mm7|chr5 (149738659-149738799)
               

               
               540-680, gnl|monDom2|scaffold_15 (43261428-43261594)
               

               
               540-680, gnl|panTro1|chr14 (31439418-31439578)
               

               
               540-680, gnl|rheMac2|chr17 (12135958-12136121)
               

               
               540-680, gnl|rn3|chr12 (4042890-4042729)
               


               
               1022-1572, gnl|bosTau2|chr11 (44201135-44200582)
               

               
               1022-1572, gnl|Hg17|chr13 (32247488-32248042)
               

               
               1022-1572, gnl|Mm7|chr5 (149741217-149741765)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               thg (0.253582)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)

	120-239, - strand, RNAz p=0.697732
	1022-1287, - strand, RNAz p=0.993233
	1328-1482, + strand, RNAz p=0.978059

	1-431, gnl\|bosTau2\|chr11 (44205938-44205508)
	1-431, gnl\|Hg17\|chr13 (32242268-32242698)
	1-431, gnl\|Mm7\|chr5 (149733672-149734102)

	540-680, gnl\|bosTau2\|chr11 (44202553-44202413)
	540-680, gnl\|canFam2\|chr25 (10396883-10396726)
	540-680, gnl\|dasNov1\|scaffold_20067 (6696-6859)
	540-680, gnl\|echTel1\|scaffold_262802 (6192-6051)
	540-680, gnl\|galGal2\|chr1 (166435277-166435110)
	540-680, gnl\|hg17\|chr13 (32245300-32245460)
	540-680, gnl\|Hg17\|chr13 (32245327-32245464)
	540-680, gnl\|mm7\|chr5 (149738634-149738795)
	540-680, gnl\|Mm7\|chr5 (149738659-149738799)
	540-680, gnl\|monDom2\|scaffold_15 (43261428-43261594)
	540-680, gnl\|panTro1\|chr14 (31439418-31439578)
	540-680, gnl\|rheMac2\|chr17 (12135958-12136121)
	540-680, gnl\|rn3\|chr12 (4042890-4042729)

	1022-1572, gnl\|bosTau2\|chr11 (44201135-44200582)
	1022-1572, gnl\|Hg17\|chr13 (32247488-32248042)
	1022-1572, gnl\|Mm7\|chr5 (149741217-149741765)

	thg (0.253582)
	tes (0.207814)
	sin (0.174948)
	lin (0.145603)
	spl (0.143184)
	che (0.136314)
	lyg (0.133103)
	bla (0.124347)
	cbl (0.114797)