Ss1.1-Pig4-TMW8025A17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTCAGTGCTGTGGCGACCGTGGTGTATCTTCGCAAAGAGAACTGTATGTACCAGGCC TGCCCAACGCAGGACTGCAACAAGAAGGTGATCGATCAGCAGAATGGGTTGTACCGCTGT GAGAAGTGTGACAGCGAATTCCCCAACTTCAAGTACCGCATGATCCTGTCGGTAAATATT GCCGATTTTCAAGAGAATCAATGGGTCACATGTTTCCAGGAGTCTGCAGAAGCCATCCTT GGGCAAAGCACTGCTTATCTTGGGGAGCTAAAGGAGAAGAACGAGCAAGCCTTTGAGGAA GTTTTCCAGAACGCCAACTTCCGGTCTTTCACCTTCAGGATCAGAGTCAAACTGGAGACC TACAACGATGAGTCTCGAATTAAGGGCACTGTGATGGACGTGAAGCCCGTGGACTACAAA GAATATGGCAGAAGGCTGATCATGAGCATCCGCAAAAACGCAGCCATGTGAGACGCGACA GAAGCGTGAAGACACAGAGCTGAAGCAGCTCGATACCCCCGATCCCGCGTGGCAGGTCCC CGTTGGCTGCACGGACCTGAGAGCCTCTGTGGTGGACTCGGCCGTCGCCTCTCTTGTGCA CAGCCGGAAGCCACTGGCAGCCAAGGGAAATTCGCTCGGTGGTGTGCGGTGTCAACCGTG TCAGACCCCGGGGTCGGCCGGCGGGTCGTGTAGTAACAGTCACTCCTTCTGTCTTCAGGC TTTTGTCAGTTTTATTAAGATTTCATTATCTTCAACGAGGAATTATGTCACGAGTAATTG ACCCTGAATCTGCAGGCAGTGAAATAAATTATGTAAGTAGCGTTTCCGCTTCTCCCGTGG TGACACGCTCACAACGTGGGTCCCTTCTCGGGAGGGAGAGCCGAGACGTGGCCGTGCGGA GGATCCTGGGACTTCCAGTGAGGGTGTCTTCCTAGAATTCAAAGGCTCTCTTTCTAGAGG TGCCACATAGTCGTTAATGCTTGGAATGGCAACGGGGTAGAATTATTAATCAAAGTCGTA TCTTTTATATCTGAAGAAGATCCTTCCTTCAGGGTTTAATAGGCTGAGTCAGATGGGTCT GATATTAATCAAAATCGTCTCCTCTGAGGAAGGCTGATGAGCATTGACTTGCATCCCCAA GGGACATCCAGACAACTACAAAGCATTGCTTTCGTTTTCCCTGCCATTAATATTGCATTT TGGTTGGTGGATTCACGCCTCTCCTACCTGTATGTATTTCTTGCATGTGGATGTTTCTTT TCTTGATTAGAGCCATGTTAAATAGTAGGGATTAGGAAGGGAGAAGCCCTCTGTTCCCTT GCTTTGTTTAATAATAAACAGTATATTCTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTCAGTGCTGTGGCGACCGTGGTGTATCTTCGCAAAGAGAACTGTATGTACCAGGCC TGCCCAACGCAGGACTGCAACAAGAAGGTGATCGATCAGCAGAATGGGTTGTACCGCTGT GAGAAGTGTGACAGCGAATTCCCCAACTTCAAGTACCGCATGATCCTGTCGGTAAATATT GCCGATTTTCAAGAGAATCAATGGGTCACATGTTTCCAGGAGTCTGCAGAAGCCATCCTT GGGCAAAGCACTGCTTATCTTGGGGAGCTAAAGGAGAAGAACGAGCAAGCCTTTGAGGAA GTTTTCCAGAACGCCAACTTCCGGTCTTTCACCTTCAGGATCAGAGTCAAACTGGAGACC TACAACGATGAGTCTCGAATTAAGGGCACTGTGATGGACGTGAAGCCCGTGGACTACAAA GAATATGGCAGAAGGCTGATCATGAGCATCCGCAAAAACGCAGCCATGTGAGACGCGACA GAAGCGTGAAGACACAGAGCTGAAGCAGCTCGATACCCCCGATCCCGCGTGGCAGGTCCC CGTTGGCTGCACGGACCTGAGAGCCTCTGTGGTGGACTCGGCCGTCGCCTCTCTTGTGCA CAGCCGGAAGCCACTGGCAGCCAAGGGAAATTCGCTCGGTGGTGTGCGGTGTCAACCGTG TCAGACCCCGGGGTCGGCCGGCGGGTCGTGTAGTAACAGTCACTCCTTCTGTCTTCAGGC TTTTGTCAGTTTTATTAAGATTTCATTATCTTCAACGAGGAATTATGTCACGAGTAATTG ACCCTGAATCTGCAGGCAGTGAAATAAATTATGTAAGTAGCGTTTCCGCTTCTCCCGTGG TGACACGCTCACAACGTGGGTCCCTTCTCGGGAGGGAGAGCCGAGACGTGGCCGTGCGGA GGATCCTGGGACTTCCAGTGAGGGTGTCTTCCTAGAATTCAAAGGCTCTCTTTCTAGAGG TGCCACATAGTCGTTAATGCTTGGAATGGCAACGGGGTAGAATTATTAATCAAAGTCGTA TCTTTTATATCTGAAGAAGATCCTTCCTTCAGGGTTTAATAGGCTGAGTCAGATGGGTCT GATATTAATCAAAATCGTCTCCTCTGAGGAAGGCTGATGAGCATTGACTTGCATCCCCAA GGGACATCCAGACAACTACAAAGCATTGCTTTCGTTTTCCCTGCCATTAATATTGCATTT TGGTTGGTGGATTCACGCCTCTCCTACCTGTATGTATTTCTTGCATGTGGATGTTTCTTT TCTTGATTAGAGCCATGTTAAATAGTAGGGATTAGGAAGGGAGAAGCCCTCTGTTCCCTT GCTTTGTTTAATAATAAACAGTATATTCTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1042-1150, + strand, RNAz p=0.70549 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1042-1150, + strand, RNAz p=0.70549 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002945, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-178, gnl|bosTau2|chr19 (17477689-17477866) | |
| 1-178, gnl|canFam2|chr9 (49348841-49348993) | |
| 1-178, gnl|danRer3|chrNA (108605492-108605342) | |
| 1-178, gnl|dasNov1|scaffold_267926 (871-735) | |
| 1-178, gnl|echTel1|scaffold_294131 (2798-2646) | |
| 1-178, gnl|fr1|chrUn (60365094-60364943) | |
| 1-178, gnl|galGal2|chr19 (5122897-5123050) | |
| 1-178, gnl|hg17|chr17 (1738707-1738859) | |
| 1-178, gnl|Hg17|chr17 (1738725-1738902) | |
| 1-178, gnl|loxAfr1|scaffold_111956 (5007-4855) | |
| 1-178, gnl|mm7|chr11 (75388879-75388727) | |
| 1-178, gnl|Mm7|chr11 (75388859-75388682) | |
| 1-178, gnl|monDom2|scaffold_86 (3057887-3058040) | |
| 1-178, gnl|panTro1|chr19 (1898194-1898346) | |
| 1-178, gnl|rheMac2|chr16 (1677530-1677682) | |
| 1-178, gnl|rn3|chr10 (62633076-62632924) | |
| 1-178, gnl|tetNig1|chr16 (3498046-3497895) | |
| 1-178, gnl|xenTro1|scaffold_50 (2860812-2860671) | |
| 364-473, gnl|bosTau2|chr19 (17482791-17482900) | |
| 364-473, gnl|canFam2|chr9 (49358835-49358938) | |
| 364-473, gnl|dasNov1|scaffold_16869 (4222-4329) | |
| 364-473, gnl|echTel1|scaffold_265218 (5324-5432) | |
| 364-473, gnl|fr1|chrUn (60361839-60361742) | |
| 364-473, gnl|galGal2|chr19 (5127904-5128008) | |
| 364-473, gnl|hg17|chr17 (1747108-1747211) | |
| 364-473, gnl|Hg17|chr17 (1747112-1747221) | |
| 364-473, gnl|loxAfr1|scaffold_10465 (17071-16963) | |
| 364-473, gnl|mm7|chr11 (75382987-75382886) | |
| 364-473, gnl|Mm7|chr11 (75382980-75382877) | |
| 364-473, gnl|monDom2|scaffold_86 (3079575-3079682) | |
| 364-473, gnl|panTro1|chr19 (1906613-1906716) | |
| 364-473, gnl|rheMac2|chrX (53460417-53460322) | |
| 364-473, gnl|rn3|chr10 (62626899-62626799) | |
| 364-473, gnl|tetNig1|chr16 (3495023-3494926) | |
| 364-473, gnl|xenTro1|scaffold_50 (2851695-2851592) | |
| 623-1353, gnl|bosTau2|chr19 (17483110-17483831) | |
| 623-1353, gnl|Hg17|chr17 (1747385-1748108) | |
| 623-1353, gnl|Mm7|chr11 (75382716-75381933) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-178, gnl|bosTau2|chr19 (17477689-17477866) | |
| 1-178, gnl|canFam2|chr9 (49348841-49348993) | |
| 1-178, gnl|danRer3|chrNA (108605492-108605342) | |
| 1-178, gnl|dasNov1|scaffold_267926 (871-735) | |
| 1-178, gnl|echTel1|scaffold_294131 (2798-2646) | |
| 1-178, gnl|fr1|chrUn (60365094-60364943) | |
| 1-178, gnl|galGal2|chr19 (5122897-5123050) | |
| 1-178, gnl|hg17|chr17 (1738707-1738859) | |
| 1-178, gnl|Hg17|chr17 (1738725-1738902) | |
| 1-178, gnl|loxAfr1|scaffold_111956 (5007-4855) | |
| 1-178, gnl|mm7|chr11 (75388879-75388727) | |
| 1-178, gnl|Mm7|chr11 (75388859-75388682) | |
| 1-178, gnl|monDom2|scaffold_86 (3057887-3058040) | |
| 1-178, gnl|panTro1|chr19 (1898194-1898346) | |
| 1-178, gnl|rheMac2|chr16 (1677530-1677682) | |
| 1-178, gnl|rn3|chr10 (62633076-62632924) | |
| 1-178, gnl|tetNig1|chr16 (3498046-3497895) | |
| 1-178, gnl|xenTro1|scaffold_50 (2860812-2860671) | |
| 364-473, gnl|bosTau2|chr19 (17482791-17482900) | |
| 364-473, gnl|canFam2|chr9 (49358835-49358938) | |
| 364-473, gnl|dasNov1|scaffold_16869 (4222-4329) | |
| 364-473, gnl|echTel1|scaffold_265218 (5324-5432) | |
| 364-473, gnl|fr1|chrUn (60361839-60361742) | |
| 364-473, gnl|galGal2|chr19 (5127904-5128008) | |
| 364-473, gnl|hg17|chr17 (1747108-1747211) | |
| 364-473, gnl|Hg17|chr17 (1747112-1747221) | |
| 364-473, gnl|loxAfr1|scaffold_10465 (17071-16963) | |
| 364-473, gnl|mm7|chr11 (75382987-75382886) | |
| 364-473, gnl|Mm7|chr11 (75382980-75382877) | |
| 364-473, gnl|monDom2|scaffold_86 (3079575-3079682) | |
| 364-473, gnl|panTro1|chr19 (1906613-1906716) | |
| 364-473, gnl|rheMac2|chrX (53460417-53460322) | |
| 364-473, gnl|rn3|chr10 (62626899-62626799) | |
| 364-473, gnl|tetNig1|chr16 (3495023-3494926) | |
| 364-473, gnl|xenTro1|scaffold_50 (2851695-2851592) | |
| 623-1353, gnl|bosTau2|chr19 (17483110-17483831) | |
| 623-1353, gnl|Hg17|chr17 (1747385-1748108) | |
| 623-1353, gnl|Mm7|chr11 (75382716-75381933) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pro (0.512033) | |
| nbm (0.397298) | |
| csk (0.281492) | |
| kid (0.259471) | |
| ova (0.258264) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cut (0.169924) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| spc (0.113366) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| nbm (0.397298) | |
| csk (0.281492) | |
| kid (0.259471) | |
| ova (0.258264) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cut (0.169924) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| spc (0.113366) |