Non-Coding RNA Search

Ss1.1-Pig4-TMW8025A24.3

Sequence:


               
               TTTTTGGCAGTGATAAGATGTGGAGGAACTTTAAATCTGTATTACTAAGTGAAAGAACCC
AACTGAGCAGGGTACACGCTGTGATTCCAATGCTGTGACATCCTGCGAAAGCCAACGCTG
TGGTGACAGGAAAAGGATCAGTGGCTGCCAGGGCTGTAGGAAGAGGGCTGAACGGGGAGC
AGAGGGCGCTGGGGCAGGGGGACTACTCTGAACGAAACACACAGCGCTGGGCACAAGCTA
TTCATCCAAACCCATAGCGCGCACCCCAGGAGTGAACTGTCCTGGAAACCGTGCTCTTTG
GGCGCTGTGACATGTCGAGGCAGGCTCACCCACTGTACCATAGGTCCGGCTCTGGCCTCT
GGCGGGGGTGTGGGTAACTGAGGAGGCTGTGCCTGCGTGAGAGCATGGGGCCTTTGGAGA
AACTATACCTTCTACTTGATTTTGCTTTGAACCTGAAATTGCCCTTAATAAAGTCACCAA
AAAAAAAAAAAAAAAAAAAAAAGGAACAAAGAAACAGGAACTGGAAAAAGATCCCAGCTC
AGGTCATTCTGGTTACTTGGTTGCAACCAGCTGGGTTTCCTCAGAACAGCGGCTGGAATG
CAGCAGGCGCCACTCACCTTGCCCTCTGGCTTGGCTCCACGTCGCAACTTGCCTACAACT
GACAAAAAGGCACTAAAGATGGACTCGTCTGATAGTTTATCTCCAAAGCAATCAAAGTTG
TCCAGCATCTTACGGAGGCCCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGGCAGTGATAAGATGTGGAGGAACTTTAAATCTGTATTACTAAGTGAAAGAACCC
AACTGAGCAGGGTACACGCTGTGATTCCAATGCTGTGACATCCTGCGAAAGCCAACGCTG
TGGTGACAGGAAAAGGATCAGTGGCTGCCAGGGCTGTAGGAAGAGGGCTGAACGGGGAGC
AGAGGGCGCTGGGGCAGGGGGACTACTCTGAACGAAACACACAGCGCTGGGCACAAGCTA
TTCATCCAAACCCATAGCGCGCACCCCAGGAGTGAACTGTCCTGGAAACCGTGCTCTTTG
GGCGCTGTGACATGTCGAGGCAGGCTCACCCACTGTACCATAGGTCCGGCTCTGGCCTCT
GGCGGGGGTGTGGGTAACTGAGGAGGCTGTGCCTGCGTGAGAGCATGGGGCCTTTGGAGA
AACTATACCTTCTACTTGATTTTGCTTTGAACCTGAAATTGCCCTTAATAAAGTCACCAA
AAAAAAAAAAAAAAAAAAAAAAGGAACAAAGAAACAGGAACTGGAAAAAGATCCCAGCTC
AGGTCATTCTGGTTACTTGGTTGCAACCAGCTGGGTTTCCTCAGAACAGCGGCTGGAATG
CAGCAGGCGCCACTCACCTTGCCCTCTGGCTTGGCTCCACGTCGCAACTTGCCTACAACT
GACAAAAAGGCACTAAAGATGGACTCGTCTGATAGTTTATCTCCAAAGCAATCAAAGTTG
TCCAGCATCTTACGGAGGCCCCGC

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-383, gnl|bosTau2|chr5 (60640026-60640384)
               

               
               11-383, gnl|Hg17|chr12 (6510047-6509696)
               


               
               433-744, gnl|bosTau2|chr5 (60640397-60640729)
               

               
               433-744, gnl|Hg17|chr12 (6509683-6509259)
               

               
               433-744, gnl|Mm7|chr6 (125195557-125195858)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-383, gnl|bosTau2|chr5 (60640026-60640384)
               

               
               11-383, gnl|Hg17|chr12 (6510047-6509696)
               


               
               433-744, gnl|bosTau2|chr5 (60640397-60640729)
               

               
               433-744, gnl|Hg17|chr12 (6509683-6509259)
               

               
               433-744, gnl|Mm7|chr6 (125195557-125195858)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	11-383, gnl\|bosTau2\|chr5 (60640026-60640384)
	11-383, gnl\|Hg17\|chr12 (6510047-6509696)

	433-744, gnl\|bosTau2\|chr5 (60640397-60640729)
	433-744, gnl\|Hg17\|chr12 (6509683-6509259)
	433-744, gnl\|Mm7\|chr6 (125195557-125195858)