Non-Coding RNA Search

Ss1.1-Pig4-TMW8025B02.3

Sequence:


               
               AACTATAACTGCAGGCCTACACCACGGCCACAGCAATGCTGGATCCTTAACCCATTGAGT
GGGGCCAGGGATAAAATCTGAGTCCTCATGGATACTTGTTGGGTTCATTTCTGCTGAGCC
ACAACAGGAACTCCTGGATATTATTCTAGAAGTAACAAGATACTTTAATTTTCATTTCCA
CAGTGTTAAATGAGTTAATTCTGAAATCTGATGTTTAGTTTAGTTTTTTTTTTATGGCCT
ACAGTTTGTGAATGCCTTGTTTTTCCGGGTCTGCTAGTGATGGAATAAATTTGATTTGAT
ACCTAAGAATTTCCTAAAGATAGCTTTTATAATAGAGAAGGTATGTGAAGTTACACATGG
GCCTACGTTTAAATTTTTGTCTTATTTTGAATATTTCCAAAGCACATTTGCAGGGGTATT
AAATTGTGAAGCTCCTTTGAAAGTAGCTTCCAGATGACCTCAGGAAATAGTACAGATCAG
TGAGAATGTTTACAGATCCTCAAAACAACTACTACAGTGTTTAGCAAAATAAATTTGAGA
GGTAAAACAGAAGTTTCCCTTGCTTTATTTAGAGACTGGTATACAGTGTATATCTAAACT
TGTTTTCCTCTATTTAAAATGATAGATTTTTGACTGTATGCCAGTTATGTGACTATTTTG
ACATAACCAAATACATGTTTATATTTAAGACTTAGTCAATGTTTTTAAAGCAATGTGAAA
ACCACCTTTTTCTGTAGACAGGGAGAGTGGTAGTTGGTGTCAGTTCTATGAGTCGTTGAT
ATCAATTTTGTTATTTTAAATGTGTCAACAAAGCTATTTTATTATCATATATTTAATAGC
TCTTAGTTTGCATGTGTGACTTTAGTCAGTGATTTTATACAACCGAATAAAATTTCCTGA
AGAATAAGCTGTGAAATGTATCACCTTCATCTAATTTTTGAAGCATAAAGTTGTATTTTG
CCTACTTTTATTAAATTCATACTCGTAATTTAATTTGTTTGCATGTTACCTGGTGAAATA
AGCCTAAATCAGATAAGTGCAATAAAAGTGATTCTTTATATATTATCTACTGTGTTAAGA
AAGACTATTTTTAGATATTTTAAGTGTTTTGGCTTATGTAGAAATCCATCAATTCAAATC
TGTTTAAAAGATAGATGACTATATTTTAAATTTTGAGTAACATTGATTATATATCATTCC
TACTATTTTATCTTTTTTTGCAGTGTTTCTGGAAAATAGCTATGTAACTTATTGAGCATT
ATTTTGATGTTACTGTATAAATATGTATAATAAATATTAAATTCTTATTTATGTTTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTATAACTGCAGGCCTACACCACGGCCACAGCAATGCTGGATCCTTAACCCATTGAGT
GGGGCCAGGGATAAAATCTGAGTCCTCATGGATACTTGTTGGGTTCATTTCTGCTGAGCC
ACAACAGGAACTCCTGGATATTATTCTAGAAGTAACAAGATACTTTAATTTTCATTTCCA
CAGTGTTAAATGAGTTAATTCTGAAATCTGATGTTTAGTTTAGTTTTTTTTTTATGGCCT
ACAGTTTGTGAATGCCTTGTTTTTCCGGGTCTGCTAGTGATGGAATAAATTTGATTTGAT
ACCTAAGAATTTCCTAAAGATAGCTTTTATAATAGAGAAGGTATGTGAAGTTACACATGG
GCCTACGTTTAAATTTTTGTCTTATTTTGAATATTTCCAAAGCACATTTGCAGGGGTATT
AAATTGTGAAGCTCCTTTGAAAGTAGCTTCCAGATGACCTCAGGAAATAGTACAGATCAG
TGAGAATGTTTACAGATCCTCAAAACAACTACTACAGTGTTTAGCAAAATAAATTTGAGA
GGTAAAACAGAAGTTTCCCTTGCTTTATTTAGAGACTGGTATACAGTGTATATCTAAACT
TGTTTTCCTCTATTTAAAATGATAGATTTTTGACTGTATGCCAGTTATGTGACTATTTTG
ACATAACCAAATACATGTTTATATTTAAGACTTAGTCAATGTTTTTAAAGCAATGTGAAA
ACCACCTTTTTCTGTAGACAGGGAGAGTGGTAGTTGGTGTCAGTTCTATGAGTCGTTGAT
ATCAATTTTGTTATTTTAAATGTGTCAACAAAGCTATTTTATTATCATATATTTAATAGC
TCTTAGTTTGCATGTGTGACTTTAGTCAGTGATTTTATACAACCGAATAAAATTTCCTGA
AGAATAAGCTGTGAAATGTATCACCTTCATCTAATTTTTGAAGCATAAAGTTGTATTTTG
CCTACTTTTATTAAATTCATACTCGTAATTTAATTTGTTTGCATGTTACCTGGTGAAATA
AGCCTAAATCAGATAAGTGCAATAAAAGTGATTCTTTATATATTATCTACTGTGTTAAGA
AAGACTATTTTTAGATATTTTAAGTGTTTTGGCTTATGTAGAAATCCATCAATTCAAATC
TGTTTAAAAGATAGATGACTATATTTTAAATTTTGAGTAACATTGATTATATATCATTCC
TACTATTTTATCTTTTTTTGCAGTGTTTCTGGAAAATAGCTATGTAACTTATTGAGCATT
ATTTTGATGTTACTGTATAAATATGTATAATAAATATTAAATTCTTATTTATGTTTCAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               137-1319, gnl|bosTau2|chr9 (33721239-33720071)
               

               
               137-1319, gnl|Hg17|chr6 (99988210-99987033)
               

               
               137-1319, gnl|Mm7|chr4 (21840361-21841461)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-1319, gnl|bosTau2|chr9 (33721239-33720071)
               

               
               137-1319, gnl|Hg17|chr6 (99988210-99987033)
               

               
               137-1319, gnl|Mm7|chr4 (21840361-21841461)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               tra (0.123092)

	137-1319, gnl\|bosTau2\|chr9 (33721239-33720071)
	137-1319, gnl\|Hg17\|chr6 (99988210-99987033)
	137-1319, gnl\|Mm7\|chr4 (21840361-21841461)

	ret (0.3862)
	mgp (0.230681)
	fco (0.157208)
	fat (0.147427)
	tra (0.123092)