Non-Coding RNA Search

Ss1.1-Pig4-TMW8025B04.3

Sequence:


               
               CTGGGTTCCAGATGTGGCTGGAAGAAAACAGAAGTAATATTTTGTCAGACAATCCTGACT
TTTCAGATGAAGCAGACATAATAAAAGAAGGAATGGTTCGATTTAGAGTATTGTCAGCTG
AAGAAAGGAAGGCTTGGGCTGCCAAGGCCAAAGGAGGAATTGCAAGTGATGGAGCTGAAG
AAAAGAAGCGAAAACGTGTGGTCGATGAAAGTCATGAAACTGAAAACCAGGAAGAAAAAA
CGAAGGAGAATCTGAATTTGCCTAAAAAGCAAAAGCCTTTAAATCTTTCTGCAAATCAGA
AATTGTCAGCTTTTGCATTTAAGCAGGAATAGAGTAAGAACGTGAACTTAGGAAAGTAAT
GGATTTTTTTACTCATCTTTGATGAATCTGGACCTTTTAAAAAATTCTTGAGGAAACTCA
TATATTTTTAGAAGTTTAAAGACTCCTGTTTGTCTTTATAAGAAGATAATGTAGTAATTA
TAATGGTGTAGGTAATAGGGCATTTGTAAAAACTATCTTCTCTACAGATGCTCTGCCCAC
AAATGGAGGGCCATTCGGAAACATCGTGATCATAGTCACTGACTGGAGGCCACTGATATG
TCCCATTGGAAGCCAATTTGATTTGTTTCTTAAAAATCATCAAAGCCAAGATCTAAAAAC
CTCTGAGCATTGAAGTATCTTCTAGGGTTTTCTTTGTCTGGTTATGTCTTGTACTGGAAC
GTACAGCAGAAGTCCTCTTCCCAAGTGTGTTACCGTAGACAACTCTATGTCTGTACTAGA
CATAGGGGACCATGTTTTTTTGATATGGGCCCTAAATATGTAAATAATTTTGTAGATGAG
ACCTTTTGTTTATTCTGGCAGTTTCTTCATATATGCCTTTCAGTTGTCTATTTGTGTAGC
CTTTTTTTTAAAAAAAATAAAACCTTCATATTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGTTCCAGATGTGGCTGGAAGAAAACAGAAGTAATATTTTGTCAGACAATCCTGACT
TTTCAGATGAAGCAGACATAATAAAAGAAGGAATGGTTCGATTTAGAGTATTGTCAGCTG
AAGAAAGGAAGGCTTGGGCTGCCAAGGCCAAAGGAGGAATTGCAAGTGATGGAGCTGAAG
AAAAGAAGCGAAAACGTGTGGTCGATGAAAGTCATGAAACTGAAAACCAGGAAGAAAAAA
CGAAGGAGAATCTGAATTTGCCTAAAAAGCAAAAGCCTTTAAATCTTTCTGCAAATCAGA
AATTGTCAGCTTTTGCATTTAAGCAGGAATAGAGTAAGAACGTGAACTTAGGAAAGTAAT
GGATTTTTTTACTCATCTTTGATGAATCTGGACCTTTTAAAAAATTCTTGAGGAAACTCA
TATATTTTTAGAAGTTTAAAGACTCCTGTTTGTCTTTATAAGAAGATAATGTAGTAATTA
TAATGGTGTAGGTAATAGGGCATTTGTAAAAACTATCTTCTCTACAGATGCTCTGCCCAC
AAATGGAGGGCCATTCGGAAACATCGTGATCATAGTCACTGACTGGAGGCCACTGATATG
TCCCATTGGAAGCCAATTTGATTTGTTTCTTAAAAATCATCAAAGCCAAGATCTAAAAAC
CTCTGAGCATTGAAGTATCTTCTAGGGTTTTCTTTGTCTGGTTATGTCTTGTACTGGAAC
GTACAGCAGAAGTCCTCTTCCCAAGTGTGTTACCGTAGACAACTCTATGTCTGTACTAGA
CATAGGGGACCATGTTTTTTTGATATGGGCCCTAAATATGTAAATAATTTTGTAGATGAG
ACCTTTTGTTTATTCTGGCAGTTTCTTCATATATGCCTTTCAGTTGTCTATTTGTGTAGC
CTTTTTTTTAAAAAAAATAAAACCTTCATATTTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886261|ref|XP_583393.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886261|ref|XP_583393.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-367, - strand, RNAz p=0.813305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-367, - strand, RNAz p=0.813305

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-933, gnl|bosTau2|chr10 (45642201-45643006)
               

               
               129-933, gnl|Hg17|chr14 (54478161-54477354)
               

               
               129-933, gnl|Mm7|chr14 (42562925-42562049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-933, gnl|bosTau2|chr10 (45642201-45643006)
               

               
               129-933, gnl|Hg17|chr14 (54478161-54477354)
               

               
               129-933, gnl|Mm7|chr14 (42562925-42562049)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

	129-933, gnl\|bosTau2\|chr10 (45642201-45643006)
	129-933, gnl\|Hg17\|chr14 (54478161-54477354)
	129-933, gnl\|Mm7\|chr14 (42562925-42562049)

	eye (0.170503)
	fco (0.157208)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)