Non-Coding RNA Search

Ss1.1-Pig4-TMW8025B13.3.5

Sequence:


               
               AATGAGTCTCTGGTTGATTCCCATAGAGAGTCTTTTCCCCCTTCTCTTCATCCTTGACCA
CACTTAGGGGAAAGAAAGCATGGTCTTCCATGAACTGATTTTGGCCTAATTAGGCCAAGT
AAGAGATCAGTTCCGTGGAAGCCCAGACTAAGCTTCGATGGAAACTAAGCCAGAAGCGAC
AATAGTGGTGTACAGACGGGCTTAGGAGCTACTGGAGCATTGCTTTTGTTTTTGCTTCTG
TTTTTGTTTTTGTTTTTTTTAAATGATTTTAGTCTGAAGCTAGCAATGAAGCAGCCAGAT
ATGAGATAGCATGCTGATTCTAACCATGGGCTGAATTTGCTCGGATGCTCTGCACCAGAC
AGAAGCTTGAACGCTTGTGTTGTATGCTTGCGCCAACCACTGCTTGTGTGAGCATTTTGT
GCCTTGTAACAGAAAATAACTTCTAAATTCTAAAAATGCAGTTGTCATTTTCCATGCATC
ACAAAAGCCCTTTTCAAGTGAGCCTAGCCGCAGGAGGCATCCAGCTGACTTTTTGATTCC
AAGATTGTTGATTGATTGGATTGATTTTTTTCCCCCCATTCAATTTTTCGCAGAAAAATA
AATCATCTGGAGAGTCAGGGAATAAAACGTCAAAGGAAACATATAGAAGCTTAAAAAAAA
AAAAGAGTTGCTTCTGAACTTCTTTCTGCCCCTGCTCCTCCGCCTGTTTGGTTTGTTATT
GCTGCCTCTTTTCTTTCTGTACCTATGCCTTTTTTCACAGCAGTCCTTGGCTCTGCACGG
AATAAATGATACCCTCCAATCTAATTGGATATGCTTTCCGCCTTGGCATGTAAGTAAGAA
GTAAGAAACCTTTGAGGTATTTTTGACTTTTTTTAAATTAGGGAAACCATTGGGAAAGGT
GGGTAGGGAGATAGTGGTTTGCGTAGCCTTCGTTTACAAAAACAAAAAACCCCACCAAAA
CCCCACATGCATTTCAAATGGCCCACATTTGTATCTTTTTCACAAGAAACAGATAGCTTT
TACTTCCTTGATTCCAGACTGGGAATCAGAAATGACTAACCCCAGTCTGTGTTCTGCCCA
GCGATGTGGGTTCATTGGCTGTCACAGTGGGTTCTTGGTAAAGCTAGAATAAGAAACTAC
TCCCTTTCACTGGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGTCTCTGGTTGATTCCCATAGAGAGTCTTTTCCCCCTTCTCTTCATCCTTGACCA
CACTTAGGGGAAAGAAAGCATGGTCTTCCATGAACTGATTTTGGCCTAATTAGGCCAAGT
AAGAGATCAGTTCCGTGGAAGCCCAGACTAAGCTTCGATGGAAACTAAGCCAGAAGCGAC
AATAGTGGTGTACAGACGGGCTTAGGAGCTACTGGAGCATTGCTTTTGTTTTTGCTTCTG
TTTTTGTTTTTGTTTTTTTTAAATGATTTTAGTCTGAAGCTAGCAATGAAGCAGCCAGAT
ATGAGATAGCATGCTGATTCTAACCATGGGCTGAATTTGCTCGGATGCTCTGCACCAGAC
AGAAGCTTGAACGCTTGTGTTGTATGCTTGCGCCAACCACTGCTTGTGTGAGCATTTTGT
GCCTTGTAACAGAAAATAACTTCTAAATTCTAAAAATGCAGTTGTCATTTTCCATGCATC
ACAAAAGCCCTTTTCAAGTGAGCCTAGCCGCAGGAGGCATCCAGCTGACTTTTTGATTCC
AAGATTGTTGATTGATTGGATTGATTTTTTTCCCCCCATTCAATTTTTCGCAGAAAAATA
AATCATCTGGAGAGTCAGGGAATAAAACGTCAAAGGAAACATATAGAAGCTTAAAAAAAA
AAAAGAGTTGCTTCTGAACTTCTTTCTGCCCCTGCTCCTCCGCCTGTTTGGTTTGTTATT
GCTGCCTCTTTTCTTTCTGTACCTATGCCTTTTTTCACAGCAGTCCTTGGCTCTGCACGG
AATAAATGATACCCTCCAATCTAATTGGATATGCTTTCCGCCTTGGCATGTAAGTAAGAA
GTAAGAAACCTTTGAGGTATTTTTGACTTTTTTTAAATTAGGGAAACCATTGGGAAAGGT
GGGTAGGGAGATAGTGGTTTGCGTAGCCTTCGTTTACAAAAACAAAAAACCCCACCAAAA
CCCCACATGCATTTCAAATGGCCCACATTTGTATCTTTTTCACAAGAAACAGATAGCTTT
TACTTCCTTGATTCCAGACTGGGAATCAGAAATGACTAACCCCAGTCTGTGTTCTGCCCA
GCGATGTGGGTTCATTGGCTGTCACAGTGGGTTCTTGGTAAAGCTAGAATAAGAAACTAC
TCCCTTTCACTGGGAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               33-185, - strand, RNAz p=0.998112
               

               
               224-343, - strand, RNAz p=0.663161
               

               
               594-708, - strand, RNAz p=0.938789

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-185, - strand, RNAz p=0.998112
               

               
               224-343, - strand, RNAz p=0.663161
               

               
               594-708, - strand, RNAz p=0.938789

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               83-149, + strand, RNAmicro p=0.999402
               

               
               643-775, - strand, RNAmicro p=0.993106
               

               
               635-760, + strand, RNAmicro p=0.9534

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               83-149, + strand, RNAmicro p=0.999402
               

               
               643-775, - strand, RNAmicro p=0.993106
               

               
               635-760, + strand, RNAmicro p=0.9534

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               33-185, BW966998 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966998.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               33-185, BW966998 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966998.1|), blast E-value=0, identity=100%

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               33-872, gnl|bosTau2|chr6 (48225553-48226375)
               

               
               33-872, gnl|Hg17|chr4 (78314401-78315219)
               

               
               33-872, gnl|Mm7|chr5 (93160043-93160831)
               


               
               901-1119, gnl|bosTau2|chr6 (48226424-48226631)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-872, gnl|bosTau2|chr6 (48225553-48226375)
               

               
               33-872, gnl|Hg17|chr4 (78314401-78315219)
               

               
               33-872, gnl|Mm7|chr5 (93160043-93160831)
               


               
               901-1119, gnl|bosTau2|chr6 (48226424-48226631)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csp (0.161186)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	33-185, - strand, RNAz p=0.998112
	224-343, - strand, RNAz p=0.663161
	594-708, - strand, RNAz p=0.938789

	83-149, + strand, RNAmicro p=0.999402
	643-775, - strand, RNAmicro p=0.993106
	635-760, + strand, RNAmicro p=0.9534

	33-872, gnl\|bosTau2\|chr6 (48225553-48226375)
	33-872, gnl\|Hg17\|chr4 (78314401-78315219)
	33-872, gnl\|Mm7\|chr5 (93160043-93160831)

	901-1119, gnl\|bosTau2\|chr6 (48226424-48226631)