Non-Coding RNA Search

Ss1.1-Pig4-TMW8025B15.5

Sequence:


               
               CCCCTGGAAGGCTGGAGCCACGTGGTCAGGCTCCTGTGTAACAGCCTGACCGGCCTTCTG
GACTCAGTGAGGCTGATCCAGTCCGTTGGCCCTTGGGCCCAAGGACAAGAGCAGGACCTG
AGCCAGGAAGCCCTCTTTTTTTACACGCAGGTGTTCTGCCATGTCCTGCACATCATGGCC
ATGCTCCACCAAGAGCTGTGCGAACCACTCTACGTTCTGGCCTTGGAGATCCTCACCTGC
TACGAGACCCTGAGCAAGACCAACCCTTCCGTTAGCTCCTTGCTCCAGAAAGTCAACGAG
CAGCGCTTCTTAAAGTCCATTGCCGAGAACATCACCCCTGAGGAGCGGCGCCAAACCCTG
CTGCAGAAGATCAGCAGCTTCTGACCTCGGGGATCAGAAAATAGCTGGGCCTCACCCTGG
CGGGGTCTGCAGGCCCTGAGCTGAGAAACGCAAACTTTCCAGGTACGTGACATTGTACAG
AAGCCCAAAAATGTGACAGTAGCAGTGCAAAGAAAATAGTTTCTTAGGTATTTGTAACAT
ACAAATTATAATAAAATGCTCTCTGGAGTTTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTGGAAGGCTGGAGCCACGTGGTCAGGCTCCTGTGTAACAGCCTGACCGGCCTTCTG
GACTCAGTGAGGCTGATCCAGTCCGTTGGCCCTTGGGCCCAAGGACAAGAGCAGGACCTG
AGCCAGGAAGCCCTCTTTTTTTACACGCAGGTGTTCTGCCATGTCCTGCACATCATGGCC
ATGCTCCACCAAGAGCTGTGCGAACCACTCTACGTTCTGGCCTTGGAGATCCTCACCTGC
TACGAGACCCTGAGCAAGACCAACCCTTCCGTTAGCTCCTTGCTCCAGAAAGTCAACGAG
CAGCGCTTCTTAAAGTCCATTGCCGAGAACATCACCCCTGAGGAGCGGCGCCAAACCCTG
CTGCAGAAGATCAGCAGCTTCTGACCTCGGGGATCAGAAAATAGCTGGGCCTCACCCTGG
CGGGGTCTGCAGGCCCTGAGCTGAGAAACGCAAACTTTCCAGGTACGTGACATTGTACAG
AAGCCCAAAAATGTGACAGTAGCAGTGCAAAGAAAATAGTTTCTTAGGTATTTGTAACAT
ACAAATTATAATAAAATGCTCTCTGGAGTTTCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5262634|emb|CAB45755.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5262634|emb|CAB45755.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-163, - strand, RNAz p=0.966691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-163, - strand, RNAz p=0.966691

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-573, gnl|bosTau2|chr19 (16550690-16551259)
               

               
               5-573, gnl|Hg17|chr17 (595235-594608)
               

               
               5-573, gnl|Mm7|chr11 (76292710-76292150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-573, gnl|bosTau2|chr19 (16550690-16551259)
               

               
               5-573, gnl|Hg17|chr17 (595235-594608)
               

               
               5-573, gnl|Mm7|chr11 (76292710-76292150)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               eje (0.0988338)

	5-573, gnl\|bosTau2\|chr19 (16550690-16551259)
	5-573, gnl\|Hg17\|chr17 (595235-594608)
	5-573, gnl\|Mm7\|chr11 (76292710-76292150)