Ss1.1-Pig4-TMW8025B16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGGAGCAGCCCAGCTCAGGGAGGGAGTCCAAGTGTGTGGCACGAGGAGTGATGTCAA CGGCCCCGGCGGAGCAGCGGGCACAGGACCCCGGACAGCCGCGCCCGCGCCCCCAGCGCG CCGACTCCGGTTCCCAAACCGGTCTTGCAGGTCCCTGGAAGGTGGCGTCAGCATCTGCAG CCGCGTCGACGTTGTCGGAGCCTCTGCGGAGCACCCAGGAGAGCTGGACGAGGACGAGGG CCCTGGGCCTCCCCATGGAGAAGTCAGCCGCCTCAACAGAGCCCCAGGGGCCTCGGCCGG TCCTGGGCCGCGACAGCGTCCAGGTGCCCGACGACCAGGACTTCCGCAGCTTCCGATCCG AATGTGAGGCCGAGGCCGGTTGGAACCTGACCTACAGCAAGGCCGGCGTGTCTGTGTGGG TGCAGGCTATGGAGATGGATCGCACCCTGCACAAGATCAAGTGCCGGATGGAGTGTCGCG ATGTGCCAGCGGAGACGCTCTACGACGTCCTCCACGACATTGAATACCGGAAGAAGTGGG ACAGCAACGTCATTGAGACTTTCGACATTGCCCGCTTGACAGTCAACGCTGACGTGGGCT ATTACTCCTGGAGGTGTCCAAAGCCCCTGAAGAACCGTGACGTCATCACCCTCCGCTCCT GGCTCCCCATGGGCACTGATTACATCATCATGAACTACTCAGTCAAACATCCTAAATACC CGCCTCGGAAAGACTTGGTCCGAGCTGTGTCCATCCAGACGGGCTACCTCATCCAGAGCA CGGGGCCCAAGAGCTGCGTCATCACCTACCTGGCCCAGGTGGACCCCAAAGGCTCCTTAC CCAAGTGGGTGGTGAATAAATCTTCTCAGTTCCTGGCTCCCAAGGCCATGAAGAAGATGT ACAAGGCGTGCGTCAAGTACCCGGAGTGGAAGCAGAAGCATCAGCCGCACTTCAAGCCAT GGCTGCACCCGGAGCAGAGCCCGTTGCCCAGCCTGGCGCTGTCGGAGTTGTCGGTGCAGC ACGCGGACTCGCTGGAGAACATCGACGAGAGCGCCGTGGCAGAGAGCCGAGAGGAGCGCG CGGGCGGCGCGGGCGGCGAGGGCAGTGACGACGACACGTCGCTCACCTGAGCGGGGCACC ACGGCAGGGACCGAGACACGACGGGGCGGAGCCCGGGGCGGCGGATCCTCCCGCGCTTTC TCCCCCCCCCCCCCTCCCCCGCGCCTCCCGGGGACGCTGGGTTTGGGCCCAGGCTGGCGC TGCGGCCCGGCTGGACACGGCCCCAATAAACGATCCCACAGCCTCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGGAGCAGCCCAGCTCAGGGAGGGAGTCCAAGTGTGTGGCACGAGGAGTGATGTCAA CGGCCCCGGCGGAGCAGCGGGCACAGGACCCCGGACAGCCGCGCCCGCGCCCCCAGCGCG CCGACTCCGGTTCCCAAACCGGTCTTGCAGGTCCCTGGAAGGTGGCGTCAGCATCTGCAG CCGCGTCGACGTTGTCGGAGCCTCTGCGGAGCACCCAGGAGAGCTGGACGAGGACGAGGG CCCTGGGCCTCCCCATGGAGAAGTCAGCCGCCTCAACAGAGCCCCAGGGGCCTCGGCCGG TCCTGGGCCGCGACAGCGTCCAGGTGCCCGACGACCAGGACTTCCGCAGCTTCCGATCCG AATGTGAGGCCGAGGCCGGTTGGAACCTGACCTACAGCAAGGCCGGCGTGTCTGTGTGGG TGCAGGCTATGGAGATGGATCGCACCCTGCACAAGATCAAGTGCCGGATGGAGTGTCGCG ATGTGCCAGCGGAGACGCTCTACGACGTCCTCCACGACATTGAATACCGGAAGAAGTGGG ACAGCAACGTCATTGAGACTTTCGACATTGCCCGCTTGACAGTCAACGCTGACGTGGGCT ATTACTCCTGGAGGTGTCCAAAGCCCCTGAAGAACCGTGACGTCATCACCCTCCGCTCCT GGCTCCCCATGGGCACTGATTACATCATCATGAACTACTCAGTCAAACATCCTAAATACC CGCCTCGGAAAGACTTGGTCCGAGCTGTGTCCATCCAGACGGGCTACCTCATCCAGAGCA CGGGGCCCAAGAGCTGCGTCATCACCTACCTGGCCCAGGTGGACCCCAAAGGCTCCTTAC CCAAGTGGGTGGTGAATAAATCTTCTCAGTTCCTGGCTCCCAAGGCCATGAAGAAGATGT ACAAGGCGTGCGTCAAGTACCCGGAGTGGAAGCAGAAGCATCAGCCGCACTTCAAGCCAT GGCTGCACCCGGAGCAGAGCCCGTTGCCCAGCCTGGCGCTGTCGGAGTTGTCGGTGCAGC ACGCGGACTCGCTGGAGAACATCGACGAGAGCGCCGTGGCAGAGAGCCGAGAGGAGCGCG CGGGCGGCGCGGGCGGCGAGGGCAGTGACGACGACACGTCGCTCACCTGAGCGGGGCACC ACGGCAGGGACCGAGACACGACGGGGCGGAGCCCGGGGCGGCGGATCCTCCCGCGCTTTC TCCCCCCCCCCCCCTCCCCCGCGCCTCCCGGGGACGCTGGGTTTGGGCCCAGGCTGGCGC TGCGGCCCGGCTGGACACGGCCCCAATAAACGATCCCACAGCCTCAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 84-461, gnl|bosTau2|chr15 (33862345-33862722) | |
| 84-461, gnl|Hg17|chr11 (72170054-72169668) | |
| 84-461, gnl|Mm7|chr7 (97367893-97368279) | |
| 610-713, gnl|bosTau2|chr15 (33882254-33882357) | |
| 610-713, gnl|canFam2|chr21 (28465794-28465633) | |
| 610-713, gnl|danRer3|chr14 (26255127-26255012) | |
| 610-713, gnl|dasNov1|scaffold_32642 (6057-5895) | |
| 610-713, gnl|echTel1|scaffold_57150 (62-224) | |
| 610-713, gnl|fr1|chrUn (302197558-302197673) | |
| 610-713, gnl|galGal2|chr13 (7570717-7570586) | |
| 610-713, gnl|hg17|chr11 (72147197-72147357) | |
| 610-713, gnl|Hg17|chr11 (72147326-72147223) | |
| 610-713, gnl|loxAfr1|scaffold_16995 (19800-19962) | |
| 610-713, gnl|mm7|chr7 (97389559-97389401) | |
| 610-713, gnl|Mm7|chr7 (97389430-97389533) | |
| 610-713, gnl|monDom2|scaffold_74 (5269988-5269836) | |
| 610-713, gnl|oryCun1|scaffold_195289 (10468-10623) | |
| 610-713, gnl|panTro1|chr9 (73423047-73423207) | |
| 610-713, gnl|rheMac2|chr14 (70845724-70845884) | |
| 610-713, gnl|rn3|chr1 (158921136-158920978) | |
| 610-713, gnl|tetNig1|chrUn_random (47439804-47439674) | |
| 610-713, gnl|xenTro1|scaffold_2024 (23536-23675) | |
| 714-832, gnl|bosTau2|chr15 (33882997-33883115) | |
| 714-832, gnl|canFam2|chr21 (28466538-28466369) | |
| 714-832, gnl|danRer3|chr14 (26257716-26257563) | |
| 714-832, gnl|dasNov1|scaffold_32642 (6795-6626) | |
| 714-832, gnl|echTel1|scaffold_320909 (5415-5297) | |
| 714-832, gnl|fr1|chrUn (302197333-302197476) | |
| 714-832, gnl|galGal2|chr13 (7570928-7570798) | |
| 714-832, gnl|hg17|chr11 (72146452-72146621) | |
| 714-832, gnl|Hg17|chr11 (72146577-72146459) | |
| 714-832, gnl|loxAfr1|scaffold_16995 (18988-19158) | |
| 714-832, gnl|mm7|chr7 (97390290-97390123) | |
| 714-832, gnl|Mm7|chr7 (97390163-97390281) | |
| 714-832, gnl|monDom2|scaffold_74 (5271279-5271120) | |
| 714-832, gnl|oryCun1|scaffold_195289 (9827-9993) | |
| 714-832, gnl|panTro1|chr9 (73422302-73422471) | |
| 714-832, gnl|rheMac2|chr14 (70844956-70845124) | |
| 714-832, gnl|rn3|chr1 (158921849-158921682) | |
| 714-832, gnl|tetNig1|chrUn_random (47439992-47439859) | |
| 714-832, gnl|xenTro1|scaffold_2024 (19798-19935) | |
| 878-1306, gnl|bosTau2|chr15 (33885181-33885608) | |
| 878-1306, gnl|Hg17|chr11 (72143842-72143422) | |
| 878-1306, gnl|Mm7|chr7 (97392131-97392554) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-461, gnl|bosTau2|chr15 (33862345-33862722) | |
| 84-461, gnl|Hg17|chr11 (72170054-72169668) | |
| 84-461, gnl|Mm7|chr7 (97367893-97368279) | |
| 610-713, gnl|bosTau2|chr15 (33882254-33882357) | |
| 610-713, gnl|canFam2|chr21 (28465794-28465633) | |
| 610-713, gnl|danRer3|chr14 (26255127-26255012) | |
| 610-713, gnl|dasNov1|scaffold_32642 (6057-5895) | |
| 610-713, gnl|echTel1|scaffold_57150 (62-224) | |
| 610-713, gnl|fr1|chrUn (302197558-302197673) | |
| 610-713, gnl|galGal2|chr13 (7570717-7570586) | |
| 610-713, gnl|hg17|chr11 (72147197-72147357) | |
| 610-713, gnl|Hg17|chr11 (72147326-72147223) | |
| 610-713, gnl|loxAfr1|scaffold_16995 (19800-19962) | |
| 610-713, gnl|mm7|chr7 (97389559-97389401) | |
| 610-713, gnl|Mm7|chr7 (97389430-97389533) | |
| 610-713, gnl|monDom2|scaffold_74 (5269988-5269836) | |
| 610-713, gnl|oryCun1|scaffold_195289 (10468-10623) | |
| 610-713, gnl|panTro1|chr9 (73423047-73423207) | |
| 610-713, gnl|rheMac2|chr14 (70845724-70845884) | |
| 610-713, gnl|rn3|chr1 (158921136-158920978) | |
| 610-713, gnl|tetNig1|chrUn_random (47439804-47439674) | |
| 610-713, gnl|xenTro1|scaffold_2024 (23536-23675) | |
| 714-832, gnl|bosTau2|chr15 (33882997-33883115) | |
| 714-832, gnl|canFam2|chr21 (28466538-28466369) | |
| 714-832, gnl|danRer3|chr14 (26257716-26257563) | |
| 714-832, gnl|dasNov1|scaffold_32642 (6795-6626) | |
| 714-832, gnl|echTel1|scaffold_320909 (5415-5297) | |
| 714-832, gnl|fr1|chrUn (302197333-302197476) | |
| 714-832, gnl|galGal2|chr13 (7570928-7570798) | |
| 714-832, gnl|hg17|chr11 (72146452-72146621) | |
| 714-832, gnl|Hg17|chr11 (72146577-72146459) | |
| 714-832, gnl|loxAfr1|scaffold_16995 (18988-19158) | |
| 714-832, gnl|mm7|chr7 (97390290-97390123) | |
| 714-832, gnl|Mm7|chr7 (97390163-97390281) | |
| 714-832, gnl|monDom2|scaffold_74 (5271279-5271120) | |
| 714-832, gnl|oryCun1|scaffold_195289 (9827-9993) | |
| 714-832, gnl|panTro1|chr9 (73422302-73422471) | |
| 714-832, gnl|rheMac2|chr14 (70844956-70845124) | |
| 714-832, gnl|rn3|chr1 (158921849-158921682) | |
| 714-832, gnl|tetNig1|chrUn_random (47439992-47439859) | |
| 714-832, gnl|xenTro1|scaffold_2024 (19798-19935) | |
| 878-1306, gnl|bosTau2|chr15 (33885181-33885608) | |
| 878-1306, gnl|Hg17|chr11 (72143842-72143422) | |
| 878-1306, gnl|Mm7|chr7 (97392131-97392554) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ton (0.351) | |
| pty (0.285429) | |
| fli (0.202881) | |
| col (0.195008) | |
| ill (0.175593) | |
| cli (0.152812) | |
| ute (0.132784) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| pty (0.285429) | |
| fli (0.202881) | |
| col (0.195008) | |
| ill (0.175593) | |
| cli (0.152812) | |
| ute (0.132784) | |
| jca (0.11396) | |
| cty (0.10408) |