Non-Coding RNA Search

Ss1.1-Pig4-TMW8025C01.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTATTTCAATGGTCTTTATTTTTTCCTACCTGGCGTTTC
TAGCAAAAGGCCAGATAGATGGAGTTAAAATCCACCACAGTAAAGGTAAACAGAACCTCA
GAACGCCCTGGTAGGAATCCCCCCCTCCCCAAAACTGGCCCAGTCTCACCAGCAACTGAT
CCCGGCTCAGCCTTACAGCGCTCGGAGCACCCCCTCCCCCCATTTTTGTGATTCAGTCCA
GGAACATTTGGGTTGTGTCTGAGGGAAGGTCAAACTTGAGACTGAACATATTCCCACCTC
TAACACACCAGAGGAGAAAATTTTTAACCTGAAATTAGATCAGCCCTCCGCCCTCGAAGG
CATAGGGGCAAGGGACAATAACCCGCAGCACACGGAGGCCAAGTGACTCAGGCCGCCCTC
CTCCCGTTCCCCAGGGCGGTCCACACCCCAGATCCTCCTCCCAGGCCTCACACCCACGCA
TGGCAACAGGAAGCTCCCCACTTCTGCCCCATGACGCAACGATGACCGCTTGCACAAGTA
TGTCACTGGAGGGGGAAGGGGAGTGCCTGGAATTCTCCGAGGTTGGAAACGCAAACACCT
ACTATTGAAAAACCTTGAAAGGGCGGCATAGCCCCCGGTAAAAAATAAAGTCCAACCCTG
AGGAATTTAAAGAACCAAGTCTCCCTTCTCCCAGTTCCAGAAGGAGAGGGTAAGGTCCAC
GTCACAGTCCATTAAAACAGCACCTGTGGGCGCGGCAGGTCTGCGGCAAGGCGCCCGCGC
CCCCCGGCTCAGGCTCCTCGGTGCCGCGACTGCACACAGGTGGCGACGGCTCCCCGGGGG
CAGAGTCCCTCTCAGGGCCTCTCGGCAGCCCGGGAGGTGGCTCCTTTCCACGGTTTCCGA
GGGTGCTCCCGTAGGGGTGGGCCTCGCCTCGGGTCTGCGCACTCTGGCCGACGGTTCGGC
CCGCGCTCTGGGCTCCGGTAGCGCCGCTCGAGGGCCCTCAGAAGGCCACCACGGCCCGCA
CCAGCACGTTCAGCATGTTATCAGCCGGGCGGCAAGNCCGTTCGCCTCGCACGCCGGCGG
CGCCGTCGGCGGGGCGGCGGGGCTGCAGTTCAGGAGGCCGGAGAAGCGCCTCTGCAGGAC
ACGCGCCAAATTGGGGAAGGCGCCCTCCGTTTGCGCCGGAGGGGGCTGCAGGCGATTGAG
GACCTCCGAAGGGGCCCCTTCCTCCTCTTCTTCTAGACGGGCTTTCTTACTCGGGACCAG
TGCGGCGTCCCCACCGTCGCTCAGGCTGCTNTTCGCCGCTTGCGGCTGACTTTGGCAGGG
CGCGGGGCACAGGGGGCAGGGGTCTCCTCGATTCTCGGCGCCTCCTGCGTGTCCATGGGT
TCCGGAGAGGGAGGCTCACCGTCGGGGAGCGCTGCATTGGCTGCGGCTTCCGCTTCTCGC
GGTGGGTGTAGGCGAGGATCAGGGGAGCGGGCGGGTGGCAAGGGCACCTCAGGCTCGTGG
GCTTCCACCTTTGCCGAAAGGTAGAGCTCCCGGGCGTACGCATGACCAGCGACAGCTGCA
GACTCCGGTGCAACCGTAGGCCACCGCGCTGCATGCGCGAATGGTACATCTTCCAAACGG
ACAGAGTCATAATGCGTTGCGCCTCTTTCTGCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTATTTCAATGGTCTTTATTTTTTCCTACCTGGCGTTTC
TAGCAAAAGGCCAGATAGATGGAGTTAAAATCCACCACAGTAAAGGTAAACAGAACCTCA
GAACGCCCTGGTAGGAATCCCCCCCTCCCCAAAACTGGCCCAGTCTCACCAGCAACTGAT
CCCGGCTCAGCCTTACAGCGCTCGGAGCACCCCCTCCCCCCATTTTTGTGATTCAGTCCA
GGAACATTTGGGTTGTGTCTGAGGGAAGGTCAAACTTGAGACTGAACATATTCCCACCTC
TAACACACCAGAGGAGAAAATTTTTAACCTGAAATTAGATCAGCCCTCCGCCCTCGAAGG
CATAGGGGCAAGGGACAATAACCCGCAGCACACGGAGGCCAAGTGACTCAGGCCGCCCTC
CTCCCGTTCCCCAGGGCGGTCCACACCCCAGATCCTCCTCCCAGGCCTCACACCCACGCA
TGGCAACAGGAAGCTCCCCACTTCTGCCCCATGACGCAACGATGACCGCTTGCACAAGTA
TGTCACTGGAGGGGGAAGGGGAGTGCCTGGAATTCTCCGAGGTTGGAAACGCAAACACCT
ACTATTGAAAAACCTTGAAAGGGCGGCATAGCCCCCGGTAAAAAATAAAGTCCAACCCTG
AGGAATTTAAAGAACCAAGTCTCCCTTCTCCCAGTTCCAGAAGGAGAGGGTAAGGTCCAC
GTCACAGTCCATTAAAACAGCACCTGTGGGCGCGGCAGGTCTGCGGCAAGGCGCCCGCGC
CCCCCGGCTCAGGCTCCTCGGTGCCGCGACTGCACACAGGTGGCGACGGCTCCCCGGGGG
CAGAGTCCCTCTCAGGGCCTCTCGGCAGCCCGGGAGGTGGCTCCTTTCCACGGTTTCCGA
GGGTGCTCCCGTAGGGGTGGGCCTCGCCTCGGGTCTGCGCACTCTGGCCGACGGTTCGGC
CCGCGCTCTGGGCTCCGGTAGCGCCGCTCGAGGGCCCTCAGAAGGCCACCACGGCCCGCA
CCAGCACGTTCAGCATGTTATCAGCCGGGCGGCAAGNCCGTTCGCCTCGCACGCCGGCGG
CGCCGTCGGCGGGGCGGCGGGGCTGCAGTTCAGGAGGCCGGAGAAGCGCCTCTGCAGGAC
ACGCGCCAAATTGGGGAAGGCGCCCTCCGTTTGCGCCGGAGGGGGCTGCAGGCGATTGAG
GACCTCCGAAGGGGCCCCTTCCTCCTCTTCTTCTAGACGGGCTTTCTTACTCGGGACCAG
TGCGGCGTCCCCACCGTCGCTCAGGCTGCTNTTCGCCGCTTGCGGCTGACTTTGGCAGGG
CGCGGGGCACAGGGGGCAGGGGTCTCCTCGATTCTCGGCGCCTCCTGCGTGTCCATGGGT
TCCGGAGAGGGAGGCTCACCGTCGGGGAGCGCTGCATTGGCTGCGGCTTCCGCTTCTCGC
GGTGGGTGTAGGCGAGGATCAGGGGAGCGGGCGGGTGGCAAGGGCACCTCAGGCTCGTGG
GCTTCCACCTTTGCCGAAAGGTAGAGCTCCCGGGCGTACGCATGACCAGCGACAGCTGCA
GACTCCGGTGCAACCGTAGGCCACCGCGCTGCATGCGCGAATGGTACATCTTCCAAACGG
ACAGAGTCATAATGCGTTGCGCCTCTTTCTGCACTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               570-675, + strand, RNAz p=0.842724
               

               
               1526-1644, - strand, RNAz p=0.798555

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               570-675, + strand, RNAz p=0.842724
               

               
               1526-1644, - strand, RNAz p=0.798555

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004907, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004907, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-1656, gnl|bosTau2|chr7 (9343841-9342189)
               

               
               19-1656, gnl|Hg17|chr19 (13126722-13125005)
               

               
               19-1656, gnl|Mm7|chr8 (83245368-83246781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1656, gnl|bosTau2|chr7 (9343841-9342189)
               

               
               19-1656, gnl|Hg17|chr19 (13126722-13125005)
               

               
               19-1656, gnl|Mm7|chr8 (83245368-83246781)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lnt (0.426925)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	570-675, + strand, RNAz p=0.842724
	1526-1644, - strand, RNAz p=0.798555

	19-1656, gnl\|bosTau2\|chr7 (9343841-9342189)
	19-1656, gnl\|Hg17\|chr19 (13126722-13125005)
	19-1656, gnl\|Mm7\|chr8 (83245368-83246781)

	lnt (0.426925)
	med (0.232504)
	col (0.195008)
	nep (0.183925)
	eye (0.170503)
	csp (0.161186)
	cst (0.140036)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)