Non-Coding RNA Search

Ss1.1-Pig4-TMW8025C11.3

Sequence:


               
               TCCCATCATAGCTTTCAGAGAAGTATCCAGAGCCCGTCAGCAAAGCTGAACATTGTTGTC
TCTGAGGGTGGTGGTAGGTCAGGGCTGCGTCCGCCTGTGGCCCTCCCCTTCCCTTCTAAT
TCTCATCCTTGTTGAAACCTTACCTTTTGGCTCATCAGCACAAGCCCTTCTCTGCCCCTG
TTCAAATGACTGAGCTCCACCTCTTGCCAAACACCAACAAGCAAGACTGCTGCACCACAG
CAGCATGTGATCCACTGCCCGCCCGCTGCCCCAGCACCGGGGCCTCGTGGGTTGCGTTTT
ATGATAGCCACCTAGACCCTGGCGTTTTTGCTCTTTGCCTCCAATGGCACCTCCCTCCTT
AAGCTTACTGTACAGTTTCAACCAGCGTTTTATACCAGTGAGATAGTTAGCAGAAGTTGC
CACGAATCTCTCCGGTACCTAACGGTTTTCTTCCACTTCAAAAGCTGTTCTAATTGCCAA
CTGGCTGACCTAAGCTCCAGAAGAGTGTCTCCCCTTAATGGAATTTTTCCCGCAAAAGGC
TCCCTGAAGCCCTAGTTGGCCTTGGCCTGGCACTTGTTTTTTATTAGGCCTCCTGTCAGG
ATGGCTGAGAATCATGGAAGACAGATCCTCTGCTAGCCTCCGTGGTGAAGCTGTTTGACA
CCAAGTTCCTGAGAACTAGTGTTTGATTTTAAAAGGCATGTGACCCTTCTGTGTTCTAGG
GACTCAATTAGAAAAGTGAAAATTAGTAAGAGTATTATTCCTCTCACCAACTTCCTGACT
GGGTTCTCAGTCTTGTTGACTGAAATCAAATCATTTCTGACTGGGCTCAAAGACCTGTGT
TTCTTTGGACTTCTGAATCCATGTGCATATTTCCTCTGGCCACTGAACACCTTGGCGATT
CCATTAGGGTCTGGATGGGGTGAGGTCTCTTGGGGAAGGGGGAGGAAGCCCTTGGGTGTG
CAGGTTCTCCACTCACCTGAGGAAGGGCCAGGACTCTGAATTCAGCAAATACCCGTCTTG
GCTGTGGGCTTGGGAAGAAATGGCCTTTATTTACTGATTGTATTTGGTACATATTGTGTG
ATACTTGAAGAGATAAAAGGGATTTACCAGCCCTTAATTGAAATCTAAGCTTTTTATCAC
TTATTTTTTCCTTGCCCTCTCTCCTCCCTTCCACCTTTTCCCTTGCATTGTGATGATCTA
GTGGGCACTTCTGTCAACAAGACAAATGCCTCCTCTGACTATAACCTCTTAATAGTTGTG
TATAATGAAAACTGTAAACTTTTTTAAATAAAATGTGTATATACCTTGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCATCATAGCTTTCAGAGAAGTATCCAGAGCCCGTCAGCAAAGCTGAACATTGTTGTC
TCTGAGGGTGGTGGTAGGTCAGGGCTGCGTCCGCCTGTGGCCCTCCCCTTCCCTTCTAAT
TCTCATCCTTGTTGAAACCTTACCTTTTGGCTCATCAGCACAAGCCCTTCTCTGCCCCTG
TTCAAATGACTGAGCTCCACCTCTTGCCAAACACCAACAAGCAAGACTGCTGCACCACAG
CAGCATGTGATCCACTGCCCGCCCGCTGCCCCAGCACCGGGGCCTCGTGGGTTGCGTTTT
ATGATAGCCACCTAGACCCTGGCGTTTTTGCTCTTTGCCTCCAATGGCACCTCCCTCCTT
AAGCTTACTGTACAGTTTCAACCAGCGTTTTATACCAGTGAGATAGTTAGCAGAAGTTGC
CACGAATCTCTCCGGTACCTAACGGTTTTCTTCCACTTCAAAAGCTGTTCTAATTGCCAA
CTGGCTGACCTAAGCTCCAGAAGAGTGTCTCCCCTTAATGGAATTTTTCCCGCAAAAGGC
TCCCTGAAGCCCTAGTTGGCCTTGGCCTGGCACTTGTTTTTTATTAGGCCTCCTGTCAGG
ATGGCTGAGAATCATGGAAGACAGATCCTCTGCTAGCCTCCGTGGTGAAGCTGTTTGACA
CCAAGTTCCTGAGAACTAGTGTTTGATTTTAAAAGGCATGTGACCCTTCTGTGTTCTAGG
GACTCAATTAGAAAAGTGAAAATTAGTAAGAGTATTATTCCTCTCACCAACTTCCTGACT
GGGTTCTCAGTCTTGTTGACTGAAATCAAATCATTTCTGACTGGGCTCAAAGACCTGTGT
TTCTTTGGACTTCTGAATCCATGTGCATATTTCCTCTGGCCACTGAACACCTTGGCGATT
CCATTAGGGTCTGGATGGGGTGAGGTCTCTTGGGGAAGGGGGAGGAAGCCCTTGGGTGTG
CAGGTTCTCCACTCACCTGAGGAAGGGCCAGGACTCTGAATTCAGCAAATACCCGTCTTG
GCTGTGGGCTTGGGAAGAAATGGCCTTTATTTACTGATTGTATTTGGTACATATTGTGTG
ATACTTGAAGAGATAAAAGGGATTTACCAGCCCTTAATTGAAATCTAAGCTTTTTATCAC
TTATTTTTTCCTTGCCCTCTCTCCTCCCTTCCACCTTTTCCCTTGCATTGTGATGATCTA
GTGGGCACTTCTGTCAACAAGACAAATGCCTCCTCTGACTATAACCTCTTAATAGTTGTG
TATAATGAAAACTGTAAACTTTTTTAAATAAAATGTGTATATACCTTGAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               529-646, - strand, RNAz p=0.746762
               

               
               1067-1185, - strand, RNAz p=0.534321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-646, - strand, RNAz p=0.746762
               

               
               1067-1185, - strand, RNAz p=0.534321

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               492-623, - strand, RNAmicro p=0.999363

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               492-623, - strand, RNAmicro p=0.999363

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1313, gnl|bosTau2|chr4 (49241971-49243270)
               

               
               1-1313, gnl|Hg17|chr7 (129065851-129064523)
               

               
               1-1313, gnl|Mm7|chr6 (30144657-30143435)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1313, gnl|bosTau2|chr4 (49241971-49243270)
               

               
               1-1313, gnl|Hg17|chr7 (129065851-129064523)
               

               
               1-1313, gnl|Mm7|chr6 (30144657-30143435)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               gul (0.355177)
               

               
               spc (0.340097)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	529-646, - strand, RNAz p=0.746762
	1067-1185, - strand, RNAz p=0.534321

	1-1313, gnl\|bosTau2\|chr4 (49241971-49243270)
	1-1313, gnl\|Hg17\|chr7 (129065851-129064523)
	1-1313, gnl\|Mm7\|chr6 (30144657-30143435)

	gul (0.355177)
	spc (0.340097)
	isp (0.300752)
	fat (0.294855)
	lin (0.291206)
	fce (0.271592)
	bla (0.248694)
	tra (0.246184)
	eru (0.240096)
	clu (0.239292)
	cbe (0.239234)
	tes (0.207814)
	fli (0.202881)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	ski (0.146735)
	cst (0.140036)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)