Non-Coding RNA Search

Ss1.1-Pig4-TMW8025D06.3

Sequence:


               
               CGCTCTCCCCGCCGATCGCCATGGCGACAGCGACCCCCGTGCAGTCGCGCACGGGCAGCC
GCGCGGGCGGCCCCACCACGCCGCTGAGCCCCACGCGGCTGTCGCGGCTGCAGGAGAAGG
AGGAGCTGCGCGAGCTCAACGACCGGCTGGCCGTGTACATCGACAAGGTGCGCAGCCTGG
AGACAGAGAACAGCGCGCTGCAGCTGCAGGTGACCGAACGTGAGGAGGTGCGTGGCCGCG
AGCTCACCGGCCTCAAGGCTCTCTACGAGACAGAGCTGGCCGACGCACGACGCGCGCTCG
ACGACACGGCCCGCGAACGCGCCAAGCTGCAGATCGAGCTGGGCAAGTTCAAAGCCGAGC
ACGACCAGCTGCTCCTCAATTATGCTAAGAAAGAATCTGATCTTAACGGAGCCCAGATCA
AGCTTCGCGAATATGAAGCCGCTCTCAATTCGAAAGATGCAGCTCTGGCTACTGCACTTG
GTGATAAAAAAAGTTTAGAGAGTGATTTGGAGGATCTGAAGGATCAGATTGCCCAGTTGG
AAGCCTCTTTAGCTGCTGCCAAAAAACAGTTAGCAGATGAAACTTTACTTAAAGTGGATT
TGGAGAATCGCTGTCAGAGTCTTACTGAGGACTTGGAGTTTCGTAAAAACATGTATGAGG
AGGAGATAAACGAGACCAGAAGGAAGCATGAAACTCGCTTGGTAGAAGTGGATTCTGGGC
GTCAGATCGAGTATGAGTACAAGCTGGCTCAAGCCCTTCATGAGATGAGAGAGCAACATG
CTTAAAGGTTGCATATAAGAATTCAGACTGCTGTAATAATCAGATGCTATTTTACTTTAA
CTTATAAAGGCTGGGCCACAGTTGTTAATTACTGTCAACCTCTTCAAGCATTTGCATGAG
TTATATATTGCCATCTAACAAATTACTTCAAAATTTAATAACTTAAGACCGTAGACTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCTCCCCGCCGATCGCCATGGCGACAGCGACCCCCGTGCAGTCGCGCACGGGCAGCC
GCGCGGGCGGCCCCACCACGCCGCTGAGCCCCACGCGGCTGTCGCGGCTGCAGGAGAAGG
AGGAGCTGCGCGAGCTCAACGACCGGCTGGCCGTGTACATCGACAAGGTGCGCAGCCTGG
AGACAGAGAACAGCGCGCTGCAGCTGCAGGTGACCGAACGTGAGGAGGTGCGTGGCCGCG
AGCTCACCGGCCTCAAGGCTCTCTACGAGACAGAGCTGGCCGACGCACGACGCGCGCTCG
ACGACACGGCCCGCGAACGCGCCAAGCTGCAGATCGAGCTGGGCAAGTTCAAAGCCGAGC
ACGACCAGCTGCTCCTCAATTATGCTAAGAAAGAATCTGATCTTAACGGAGCCCAGATCA
AGCTTCGCGAATATGAAGCCGCTCTCAATTCGAAAGATGCAGCTCTGGCTACTGCACTTG
GTGATAAAAAAAGTTTAGAGAGTGATTTGGAGGATCTGAAGGATCAGATTGCCCAGTTGG
AAGCCTCTTTAGCTGCTGCCAAAAAACAGTTAGCAGATGAAACTTTACTTAAAGTGGATT
TGGAGAATCGCTGTCAGAGTCTTACTGAGGACTTGGAGTTTCGTAAAAACATGTATGAGG
AGGAGATAAACGAGACCAGAAGGAAGCATGAAACTCGCTTGGTAGAAGTGGATTCTGGGC
GTCAGATCGAGTATGAGTACAAGCTGGCTCAAGCCCTTCATGAGATGAGAGAGCAACATG
CTTAAAGGTTGCATATAAGAATTCAGACTGCTGTAATAATCAGATGCTATTTTACTTTAA
CTTATAAAGGCTGGGCCACAGTTGTTAATTACTGTCAACCTCTTCAAGCATTTGCATGAG
TTATATATTGCCATCTAACAAATTACTTCAAAATTTAATAACTTAAGACCGTAGACTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50415798|gb|AAH78178.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50415798|gb|AAH78178.1|

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               58-249, gnl|bosTau2|chr7 (17914781-17914972)
               

               
               58-249, gnl|canFam2|chr7 (44690337-44690472)
               

               
               58-249, gnl|danRer3|chr2 (11346889-11347024)
               

               
               58-249, gnl|dasNov1|scaffold_19696 (517-382)
               

               
               58-249, gnl|echTel1|scaffold_313146 (7726-7591)
               

               
               58-249, gnl|fr1|chrUn (71243027-71243151)
               

               
               58-249, gnl|galGal2|chr28 (611343-611478)
               

               
               58-249, gnl|hg17|chr19 (2407666-2407801)
               

               
               58-249, gnl|Hg17|chr19 (2407852-2407661)
               

               
               58-249, gnl|loxAfr1|scaffold_40470 (28041-27906)
               

               
               58-249, gnl|mm7|chr10 (80707567-80707702)
               

               
               58-249, gnl|Mm7|chr10 (80707748-80707560)
               

               
               58-249, gnl|monDom2|scaffold_75 (4742891-4743026)
               

               
               58-249, gnl|oryCun1|scaffold_204060 (134565-134699)
               

               
               58-249, gnl|rheMac2|chr1 (134717586-134717451)
               

               
               58-249, gnl|rn3|chr7 (10303827-10303692)
               

               
               58-249, gnl|tetNig1|chrUn_random (49740688-49740823)
               

               
               58-249, gnl|xenTro1|scaffold_644 (707588-707723)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-249, gnl|bosTau2|chr7 (17914781-17914972)
               

               
               58-249, gnl|canFam2|chr7 (44690337-44690472)
               

               
               58-249, gnl|danRer3|chr2 (11346889-11347024)
               

               
               58-249, gnl|dasNov1|scaffold_19696 (517-382)
               

               
               58-249, gnl|echTel1|scaffold_313146 (7726-7591)
               

               
               58-249, gnl|fr1|chrUn (71243027-71243151)
               

               
               58-249, gnl|galGal2|chr28 (611343-611478)
               

               
               58-249, gnl|hg17|chr19 (2407666-2407801)
               

               
               58-249, gnl|Hg17|chr19 (2407852-2407661)
               

               
               58-249, gnl|loxAfr1|scaffold_40470 (28041-27906)
               

               
               58-249, gnl|mm7|chr10 (80707567-80707702)
               

               
               58-249, gnl|Mm7|chr10 (80707748-80707560)
               

               
               58-249, gnl|monDom2|scaffold_75 (4742891-4743026)
               

               
               58-249, gnl|oryCun1|scaffold_204060 (134565-134699)
               

               
               58-249, gnl|rheMac2|chr1 (134717586-134717451)
               

               
               58-249, gnl|rn3|chr7 (10303827-10303692)
               

               
               58-249, gnl|tetNig1|chrUn_random (49740688-49740823)
               

               
               58-249, gnl|xenTro1|scaffold_644 (707588-707723)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	58-249, gnl\|bosTau2\|chr7 (17914781-17914972)
	58-249, gnl\|canFam2\|chr7 (44690337-44690472)
	58-249, gnl\|danRer3\|chr2 (11346889-11347024)
	58-249, gnl\|dasNov1\|scaffold_19696 (517-382)
	58-249, gnl\|echTel1\|scaffold_313146 (7726-7591)
	58-249, gnl\|fr1\|chrUn (71243027-71243151)
	58-249, gnl\|galGal2\|chr28 (611343-611478)
	58-249, gnl\|hg17\|chr19 (2407666-2407801)
	58-249, gnl\|Hg17\|chr19 (2407852-2407661)
	58-249, gnl\|loxAfr1\|scaffold_40470 (28041-27906)
	58-249, gnl\|mm7\|chr10 (80707567-80707702)
	58-249, gnl\|Mm7\|chr10 (80707748-80707560)
	58-249, gnl\|monDom2\|scaffold_75 (4742891-4743026)
	58-249, gnl\|oryCun1\|scaffold_204060 (134565-134699)
	58-249, gnl\|rheMac2\|chr1 (134717586-134717451)
	58-249, gnl\|rn3\|chr7 (10303827-10303692)
	58-249, gnl\|tetNig1\|chrUn_random (49740688-49740823)
	58-249, gnl\|xenTro1\|scaffold_644 (707588-707723)