Ss1.1-Pig4-TMW8025D10.3
|
GGACACTTCAGCCCCTGGTGGACCCCCAGAAAGAGCTGTTACTCCAGCCCTATCGTCAAA
TGTGTTACCAAGACGTCTTGGATCCCCTGCTACTTCAGTGCCTGGAATGGGTCTTCATCC
TCCTGGTCCACCTTTAGCAAGACCCATTCTGCCCCGAGAACGAGGTGCTCTGGATAGAAT
TGTTGAATATTTAGTTGGTGATGGTCCACAGAACAGGTATGCCCTGATATGTCAACAGTG
TTTTTCTCACAATGGCATGGCTTTGAAAGAAGAATTTGAATATATTGCTTTTCGTTGTGC
CTACTGTTTTTTCTTGAATCCTGCAAGAAAAACTAGACCTCAGGCTCCAAGACTTCCAGA
GTTTAGTTTTGAGAAGAGGCAGGCACTGGAAGCCTCAAGTACAGTTGGTTCCTTGCCCTC
GGGAAGTGTGATTTCATCAGAGAATCAGATCAGTGAAGAATCTTTTGAAGAACAAGGTGT
TCTAGATACCTGTACAGAGCAAACAGATGACAAAACACTAGATACAGAGCAGACAAACCA
AGTGATTGAACAAGCATCTGGCACAGAGGAACCAGAGGAGAAGCAAGAAGAGACCGAGAA
TGAGGAAACCTCAATGAATGAATCCAAATCACCAATATCGAGAGCTGATGCTATTCCTAA
TCCTGAACTAAGTGGAGAATCATTGACAATGTAGTAAATGCTTCCACGTGCCTTCAACTG
ATATTTGTAGTCTTGTTGATGCCAGTTATTGCTTTTTTAGGTGGTGCTTTCTTCCCCCCA
CCCAAAGACATGCTTGATATCATTTGAATTCAGATTGCCTATTTCAGTATGTCAAAGTTA
CGTCTACTGGGTATTTAAATTAAAAGTAAGTGATATCAGTACAGTAAAACCCTTTTTAAT
GTGCAAAACTCCACACTGTGTAGACAGCTTTTAGGTATTTATTCCCATTCTAAAAGTAAA
AAATATGATAGAGGTTTTGTTTTCTATTTGTGACCTGTAAATACTATCCATTTTGACATA
GGAAGAACTTTGGTTAGGAATAAGTTCTAATAGTGTTTGTTTTAAGGAATGATACACAAT
TAAGATTTTTAATACTTCATCATTAAAGTGGATGGAATTTTAACTCTTAAAATATTTGCC
AGGGAGTGAAATGTTTATTTAGGCATTTATATTAAGAGGTGTGAAAGTTATTGCAGTAAC
AATATAGGCATTGGTTTTCTCAGTAAGAATGCAGTTGAACTGTCAAGTGCAGTGTTACTT
TTGGATGTGTCTTATTTTGCACCTGGGCCAGAGGTACCTGATGTATATAATTAGCTTATG
TTTACATATTAACATATAGGAAATATCTCTGCATTTGACTGCACTTGAATTTTGAACATT
ATTTATATTTGTAAAATAATGATGATATTATAAGTGAATTCTGTGCTCTTGTGTGTATTT
TGCTAAGGAAAATAAAGATGATCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGACACTTCAGCCCCTGGTGGACCCCCAGAAAGAGCTGTTACTCCAGCCCTATCGTCAAA
TGTGTTACCAAGACGTCTTGGATCCCCTGCTACTTCAGTGCCTGGAATGGGTCTTCATCC
TCCTGGTCCACCTTTAGCAAGACCCATTCTGCCCCGAGAACGAGGTGCTCTGGATAGAAT
TGTTGAATATTTAGTTGGTGATGGTCCACAGAACAGGTATGCCCTGATATGTCAACAGTG
TTTTTCTCACAATGGCATGGCTTTGAAAGAAGAATTTGAATATATTGCTTTTCGTTGTGC
CTACTGTTTTTTCTTGAATCCTGCAAGAAAAACTAGACCTCAGGCTCCAAGACTTCCAGA
GTTTAGTTTTGAGAAGAGGCAGGCACTGGAAGCCTCAAGTACAGTTGGTTCCTTGCCCTC
GGGAAGTGTGATTTCATCAGAGAATCAGATCAGTGAAGAATCTTTTGAAGAACAAGGTGT
TCTAGATACCTGTACAGAGCAAACAGATGACAAAACACTAGATACAGAGCAGACAAACCA
AGTGATTGAACAAGCATCTGGCACAGAGGAACCAGAGGAGAAGCAAGAAGAGACCGAGAA
TGAGGAAACCTCAATGAATGAATCCAAATCACCAATATCGAGAGCTGATGCTATTCCTAA
TCCTGAACTAAGTGGAGAATCATTGACAATGTAGTAAATGCTTCCACGTGCCTTCAACTG
ATATTTGTAGTCTTGTTGATGCCAGTTATTGCTTTTTTAGGTGGTGCTTTCTTCCCCCCA
CCCAAAGACATGCTTGATATCATTTGAATTCAGATTGCCTATTTCAGTATGTCAAAGTTA
CGTCTACTGGGTATTTAAATTAAAAGTAAGTGATATCAGTACAGTAAAACCCTTTTTAAT
GTGCAAAACTCCACACTGTGTAGACAGCTTTTAGGTATTTATTCCCATTCTAAAAGTAAA
AAATATGATAGAGGTTTTGTTTTCTATTTGTGACCTGTAAATACTATCCATTTTGACATA
GGAAGAACTTTGGTTAGGAATAAGTTCTAATAGTGTTTGTTTTAAGGAATGATACACAAT
TAAGATTTTTAATACTTCATCATTAAAGTGGATGGAATTTTAACTCTTAAAATATTTGCC
AGGGAGTGAAATGTTTATTTAGGCATTTATATTAAGAGGTGTGAAAGTTATTGCAGTAAC
AATATAGGCATTGGTTTTCTCAGTAAGAATGCAGTTGAACTGTCAAGTGCAGTGTTACTT
TTGGATGTGTCTTATTTTGCACCTGGGCCAGAGGTACCTGATGTATATAATTAGCTTATG
TTTACATATTAACATATAGGAAATATCTCTGCATTTGACTGCACTTGAATTTTGAACATT
ATTTATATTTGTAAAATAATGATGATATTATAAGTGAATTCTGTGCTCTTGTGTGTATTT
TGCTAAGGAAAATAAAGATGATCT
|
|
gi|47205818|emb|CAF91725.1| |
Protein identifier
|
gi|47205818|emb|CAF91725.1| |
|
58-234, gnl|bosTau2|chr10 (27176331-27176155) |
|
58-234, gnl|Hg17|chr15 (38669203-38669018) |
|
58-234, gnl|Mm7|chr2 (118781757-118781592) |
| |
|
457-1064, gnl|bosTau2|chr2 (13137478-13138091) |
|
457-1064, gnl|canFam2|chr36 (22758806-22759546) |
|
457-1064, gnl|dasNov1|scaffold_176045 (3371-2649) |
|
457-1064, gnl|echTel1|scaffold_313754 (121445-122126) |
|
457-1064, gnl|galGal2|chr7 (17191758-17191117) |
|
457-1064, gnl|hg17|chr2 (176619693-176620408) |
|
457-1064, gnl|Hg17|chr2 (176620436-176619838) |
|
457-1064, gnl|loxAfr1|scaffold_8689 (32266-32957) |
|
457-1064, gnl|mm7|chr2 (74365326-74365984) |
|
457-1064, gnl|Mm7|chr2 (74366015-74365458) |
|
457-1064, gnl|monDom2|scaffold_2 (75826963-75827685) |
|
457-1064, gnl|rheMac2|chr12 (39563046-39563766) |
|
457-1064, gnl|rn3|chr3 (57033175-57033838) |
|
457-1064, gnl|xenTro1|scaffold_353 (492068-492676) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
58-234, gnl|bosTau2|chr10 (27176331-27176155) |
|
58-234, gnl|Hg17|chr15 (38669203-38669018) |
|
58-234, gnl|Mm7|chr2 (118781757-118781592) |
| |
|
457-1064, gnl|bosTau2|chr2 (13137478-13138091) |
|
457-1064, gnl|canFam2|chr36 (22758806-22759546) |
|
457-1064, gnl|dasNov1|scaffold_176045 (3371-2649) |
|
457-1064, gnl|echTel1|scaffold_313754 (121445-122126) |
|
457-1064, gnl|galGal2|chr7 (17191758-17191117) |
|
457-1064, gnl|hg17|chr2 (176619693-176620408) |
|
457-1064, gnl|Hg17|chr2 (176620436-176619838) |
|
457-1064, gnl|loxAfr1|scaffold_8689 (32266-32957) |
|
457-1064, gnl|mm7|chr2 (74365326-74365984) |
|
457-1064, gnl|Mm7|chr2 (74366015-74365458) |
|
457-1064, gnl|monDom2|scaffold_2 (75826963-75827685) |
|
457-1064, gnl|rheMac2|chr12 (39563046-39563766) |
|
457-1064, gnl|rn3|chr3 (57033175-57033838) |
|
457-1064, gnl|xenTro1|scaffold_353 (492068-492676) |
|
bfe (0.449573) |
|
tes (0.415628) |
|
cbe (0.239234) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
bfe (0.449573) |
|
tes (0.415628) |
|
cbe (0.239234) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
jca (0.11396) |
