Ss1.1-Pig4-TMW8025D20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGGGAAGCTTAGCAGATCTGTACTTCAGAGCTGGAGACAACAAAAACTCTGTCCTC AAGTTTGAACAGGCACAGATGTTGGATCCTTATCTGATAAAAGGAATGGATGTATATGGC TACCTCCTGGCACGAGAAGGGCGGCTGGAAGATGTGGAGAACCTTGGCTGCCGCCTTTTC AATATTTCTGATCAACATGCAGAACCTTGGGTGGTCTCTGGGTGTCATAGCTTCTATAGC AAGCGCTATTCCCGAGCCCTCTATTTAGGAGCCAAGGCGATTCAGCTGAATAGTAATAGT GTTCAGGCTTTGCTACTTAAGGGAGCAGCACTTAGAAATATGGGCAGAGTCCAAGAAGCA ATAATCCACTTTCGGGAGGCTATACGTCTTGCACCTTGTCGCTTAGATTGTTATGAAGGT CTCATCGAATGTTACTTAGCCTCCAACAGTATTCGAGAAGCAATGGTAATGGCTAACAAT GTTTACAAAACTCTAGGAGCAAATGCACAGACCCTTACCCTTTTAGCCACCGTTTGTCTT GAAGACCCAGTGACACAGGAGAAAGCCAAAACTTTATTAGATAAAGCCCTGACCCAAAGA CCGGATTACATTAAGGCTGTGGTGAAAAAAGCAGAACTACTTAGCAGAGAACAGAAATAT GAAGATGGAATTGCTTTGTTGAGGAATGCACTAGCTAATCAGAGTGACTGTGTCCTGCAT CGGATCCTAGGAGATTTCCTTGTAGCTGTCAATGAGTATCAGGAAGCAATGGACCAGTAT AGTATAGCACTAAGTTTGGACCCCAATGACCAGAAGTCTCTAGAGGGGATGCAGAAGATG GAGAAGGAGGAGATGTAACAGGAGTTCTGCAAATACACTTTGTATCCACAGTTGAAAACA GAGTAATAATAGTATGGTAGAAGAGTTGTTTGTGAATTTATGACTTCTTGGGCTGACCAG GAGCAGTGGTTCGGCATGCAGTGAGGCAGGCAGCAGCTCCGTGGCCACACTGGCCTGCCC TGCTCTGAGCACTTCCATGGACTGAAGGAACCCGTAGGAGCCTGCTCTCTGGGAGGACAA TGATTCAGCATGTGATTGCAGCAGGGGTCTCTGCCCTTTGCTCTCTATTTCTAGTAGTGA CTTTATTTTTAATTCTACCTACTGTAGTAGTTAAGAACTTAAGCTCTGCTCCCCTGCTCC AGCCAGGGAGGACGAGTGAGCACTCTTTAGAGGCCCATGGACGTGTCAGCTTCTGGACAG AGTGCTTTTTATAGAACTAATTTCTAAATCTGAAGCTCAAGGAATAGACAGTGTTTTTTT TTTTGTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGGGAAGCTTAGCAGATCTGTACTTCAGAGCTGGAGACAACAAAAACTCTGTCCTC AAGTTTGAACAGGCACAGATGTTGGATCCTTATCTGATAAAAGGAATGGATGTATATGGC TACCTCCTGGCACGAGAAGGGCGGCTGGAAGATGTGGAGAACCTTGGCTGCCGCCTTTTC AATATTTCTGATCAACATGCAGAACCTTGGGTGGTCTCTGGGTGTCATAGCTTCTATAGC AAGCGCTATTCCCGAGCCCTCTATTTAGGAGCCAAGGCGATTCAGCTGAATAGTAATAGT GTTCAGGCTTTGCTACTTAAGGGAGCAGCACTTAGAAATATGGGCAGAGTCCAAGAAGCA ATAATCCACTTTCGGGAGGCTATACGTCTTGCACCTTGTCGCTTAGATTGTTATGAAGGT CTCATCGAATGTTACTTAGCCTCCAACAGTATTCGAGAAGCAATGGTAATGGCTAACAAT GTTTACAAAACTCTAGGAGCAAATGCACAGACCCTTACCCTTTTAGCCACCGTTTGTCTT GAAGACCCAGTGACACAGGAGAAAGCCAAAACTTTATTAGATAAAGCCCTGACCCAAAGA CCGGATTACATTAAGGCTGTGGTGAAAAAAGCAGAACTACTTAGCAGAGAACAGAAATAT GAAGATGGAATTGCTTTGTTGAGGAATGCACTAGCTAATCAGAGTGACTGTGTCCTGCAT CGGATCCTAGGAGATTTCCTTGTAGCTGTCAATGAGTATCAGGAAGCAATGGACCAGTAT AGTATAGCACTAAGTTTGGACCCCAATGACCAGAAGTCTCTAGAGGGGATGCAGAAGATG GAGAAGGAGGAGATGTAACAGGAGTTCTGCAAATACACTTTGTATCCACAGTTGAAAACA GAGTAATAATAGTATGGTAGAAGAGTTGTTTGTGAATTTATGACTTCTTGGGCTGACCAG GAGCAGTGGTTCGGCATGCAGTGAGGCAGGCAGCAGCTCCGTGGCCACACTGGCCTGCCC TGCTCTGAGCACTTCCATGGACTGAAGGAACCCGTAGGAGCCTGCTCTCTGGGAGGACAA TGATTCAGCATGTGATTGCAGCAGGGGTCTCTGCCCTTTGCTCTCTATTTCTAGTAGTGA CTTTATTTTTAATTCTACCTACTGTAGTAGTTAAGAACTTAAGCTCTGCTCCCCTGCTCC AGCCAGGGAGGACGAGTGAGCACTCTTTAGAGGCCCATGGACGTGTCAGCTTCTGGACAG AGTGCTTTTTATAGAACTAATTTCTAAATCTGAAGCTCAAGGAATAGACAGTGTTTTTTT TTTTGTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 466-625, - strand, RNAz p=0.780093 | |
| 1108-1223, - strand, RNAz p=0.974021 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 466-625, - strand, RNAz p=0.780093 | |
| 1108-1223, - strand, RNAz p=0.974021 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 102-223, gnl|bosTau2|chr17 (30307736-30307857) | |
| 102-223, gnl|canFam2|chr26 (11249842-11249983) | |
| 102-223, gnl|danRer3|chr8 (3986363-3986492) | |
| 102-223, gnl|dasNov1|scaffold_28274 (4388-4245) | |
| 102-223, gnl|echTel1|scaffold_312394 (243635-243492) | |
| 102-223, gnl|fr1|chrUn (56449507-56449650) | |
| 102-223, gnl|galGal2|chr15 (5245218-5245080) | |
| 102-223, gnl|hg17|chr12 (109283354-109283497) | |
| 102-223, gnl|Hg17|chr12 (109283487-109283366) | |
| 102-223, gnl|loxAfr1|scaffold_68252 (5017-5160) | |
| 102-223, gnl|mm7|chr5 (121672483-121672342) | |
| 102-223, gnl|Mm7|chr5 (121672349-121672470) | |
| 102-223, gnl|monDom2|scaffold_97 (959784-959641) | |
| 102-223, gnl|oryCun1|scaffold_158612 (4680-4823) | |
| 102-223, gnl|panTro1|chr10 (111879793-111879936) | |
| 102-223, gnl|rheMac2|chr11 (111296398-111296541) | |
| 102-223, gnl|rn3|chr12 (35198737-35198879) | |
| 102-223, gnl|tetNig1|chr12 (11608525-11608665) | |
| 102-223, gnl|xenTro1|scaffold_501 (535875-535746) | |
| 389-644, gnl|bosTau2|chr17 (30310903-30311156) | |
| 389-644, gnl|Hg17|chr12 (109278174-109277917) | |
| 389-644, gnl|Mm7|chr5 (121674302-121674533) | |
| 949-1317, gnl|bosTau2|chr17 (30313824-30314177) | |
| 949-1317, gnl|Hg17|chr12 (109274704-109274339) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-223, gnl|bosTau2|chr17 (30307736-30307857) | |
| 102-223, gnl|canFam2|chr26 (11249842-11249983) | |
| 102-223, gnl|danRer3|chr8 (3986363-3986492) | |
| 102-223, gnl|dasNov1|scaffold_28274 (4388-4245) | |
| 102-223, gnl|echTel1|scaffold_312394 (243635-243492) | |
| 102-223, gnl|fr1|chrUn (56449507-56449650) | |
| 102-223, gnl|galGal2|chr15 (5245218-5245080) | |
| 102-223, gnl|hg17|chr12 (109283354-109283497) | |
| 102-223, gnl|Hg17|chr12 (109283487-109283366) | |
| 102-223, gnl|loxAfr1|scaffold_68252 (5017-5160) | |
| 102-223, gnl|mm7|chr5 (121672483-121672342) | |
| 102-223, gnl|Mm7|chr5 (121672349-121672470) | |
| 102-223, gnl|monDom2|scaffold_97 (959784-959641) | |
| 102-223, gnl|oryCun1|scaffold_158612 (4680-4823) | |
| 102-223, gnl|panTro1|chr10 (111879793-111879936) | |
| 102-223, gnl|rheMac2|chr11 (111296398-111296541) | |
| 102-223, gnl|rn3|chr12 (35198737-35198879) | |
| 102-223, gnl|tetNig1|chr12 (11608525-11608665) | |
| 102-223, gnl|xenTro1|scaffold_501 (535875-535746) | |
| 389-644, gnl|bosTau2|chr17 (30310903-30311156) | |
| 389-644, gnl|Hg17|chr12 (109278174-109277917) | |
| 389-644, gnl|Mm7|chr5 (121674302-121674533) | |
| 949-1317, gnl|bosTau2|chr17 (30313824-30314177) | |
| 949-1317, gnl|Hg17|chr12 (109274704-109274339) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| ret (0.257467) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ski (0.146735) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cbl (0.114797) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.257467) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ski (0.146735) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cbl (0.114797) |