Ss1.1-Pig4-TMW8025E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGTG GGCCAGGTTCCAAGGACCTGGTCTGAGAAGGACTTGAGGGAACTCTTTGAACAGTATGGT GCTGTGTATGAAATCAACGTCCTAAGGGATAGGAGCCAAAACCCTCCTCAGAGCAAAGGG TGCTGTTTTGTTACATTTTACACCCGAAAAGCTGCATTAGAAGCTCAGAATGCTCTTCAC AACATGAAAGTCCTCCCAGGGATGCATCATCCTATACAGATGAAACCTGCTGACAGTGAG AAGAACAATGCAGTGGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAAGAAGTGCACT GAAAATGACATCCGAGTCATGTTCTCTTCATTTGGGCAGATTGAAGAATGCCGGATATTG AGAGGACCTGATGGCCTGAGCCGAGGGTGTGCATTTGTGACTTTTACAACAAGAGCCATG GCACAGACGGCTATCAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCCCCC ATGGTGGTAAAATTTGCTGATACCCAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAG CTCCAGCAGCAGATGCAGCAAATCAGTGCAGCGTCTGTGTGGGGGAACCTTGCTGGTCTA AATACTCTTGGACCCCAGTATTTAGCACTTTATTTGCAGCTCCTTCAGCAGACTGCCTCC TCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTAAATGCAATGCAG TTACAGAATTTGGCTGCACTAGCTGCAGCAGCTAGTGCAGCTCAGAACACACCAAGTGGT ACCAATGCTCTCACTACATCCAGCAGTCCCCTCAGCGTACTCACCAGTTCAGGGTCCTCA CCAAGCTCCAGCAGCAGCAGCTCTGTCAACCCCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGTG GGCCAGGTTCCAAGGACCTGGTCTGAGAAGGACTTGAGGGAACTCTTTGAACAGTATGGT GCTGTGTATGAAATCAACGTCCTAAGGGATAGGAGCCAAAACCCTCCTCAGAGCAAAGGG TGCTGTTTTGTTACATTTTACACCCGAAAAGCTGCATTAGAAGCTCAGAATGCTCTTCAC AACATGAAAGTCCTCCCAGGGATGCATCATCCTATACAGATGAAACCTGCTGACAGTGAG AAGAACAATGCAGTGGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAAGAAGTGCACT GAAAATGACATCCGAGTCATGTTCTCTTCATTTGGGCAGATTGAAGAATGCCGGATATTG AGAGGACCTGATGGCCTGAGCCGAGGGTGTGCATTTGTGACTTTTACAACAAGAGCCATG GCACAGACGGCTATCAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCCCCC ATGGTGGTAAAATTTGCTGATACCCAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAG CTCCAGCAGCAGATGCAGCAAATCAGTGCAGCGTCTGTGTGGGGGAACCTTGCTGGTCTA AATACTCTTGGACCCCAGTATTTAGCACTTTATTTGCAGCTCCTTCAGCAGACTGCCTCC TCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTAAATGCAATGCAG TTACAGAATTTGGCTGCACTAGCTGCAGCAGCTAGTGCAGCTCAGAACACACCAAGTGGT ACCAATGCTCTCACTACATCCAGCAGTCCCCTCAGCGTACTCACCAGTTCAGGGTCCTCA CCAAGCTCCAGCAGCAGCAGCTCTGTCAACCCCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 40-179, + strand, RNAz p=0.897563 | |
| 762-893, + strand, RNAz p=0.995232 | |
| 762-893, - strand, RNAz p=0.995232 | |
| 762-893, + strand, RNAz p=0.965612 | |
| 762-893, - strand, RNAz p=0.965612 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-179, + strand, RNAz p=0.897563 | |
| 762-893, + strand, RNAz p=0.995232 | |
| 762-893, - strand, RNAz p=0.995232 | |
| 762-893, + strand, RNAz p=0.965612 | |
| 762-893, - strand, RNAz p=0.965612 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR614032, + |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 1-179, gnl|bosTau2|chr15 (48838841-48839019) | |
| 1-179, gnl|canFam2|chr18 (45197059-45196846) | |
| 1-179, gnl|canFam2|chr2 (28004845-28004661) | |
| 1-179, gnl|danRer3|chr16 (27250422-27250238) | |
| 1-179, gnl|danRer3|chr7 (28758381-28758605) | |
| 1-179, gnl|dasNov1|scaffold_255114 (3786-3607) | |
| 1-179, gnl|dasNov1|scaffold_62459 (1967-2147) | |
| 1-179, gnl|echTel1|scaffold_317777 (360-176) | |
| 1-179, gnl|echTel1|scaffold_317777 (181-373) | |
| 1-179, gnl|fr1|chrUn (104066543-104066362) | |
| 1-179, gnl|fr1|chrUn (314566027-314566222) | |
| 1-179, gnl|galGal2|chr1 (4465021-4464838) | |
| 1-179, gnl|galGal2|chr5 (20124688-20124472) | |
| 1-179, gnl|hg17|chr10 (11247475-11247659) | |
| 1-179, gnl|hg17|chr11 (47466956-47467173) | |
| 1-179, gnl|Hg17|chr11 (47467142-47466964) | |
| 1-179, gnl|loxAfr1|scaffold_7460 (56582-56766) | |
| 1-179, gnl|loxAfr1|scaffold_7460 (56768-56552) | |
| 1-179, gnl|mm7|chr2 (6638868-6638684) | |
| 1-179, gnl|mm7|chr2 (90849494-90849277) | |
| 1-179, gnl|Mm7|chr2 (90849306-90849484) | |
| 1-179, gnl|monDom2|scaffold_33 (13328468-13328288) | |
| 1-179, gnl|monDom2|scaffold_33 (13328281-13328498) | |
| 1-179, gnl|oryCun1|scaffold_206007 (142852-143036) | |
| 1-179, gnl|oryCun1|scaffold_206007 (143031-142839) | |
| 1-179, gnl|panTro1|chr8 (11387707-11387891) | |
| 1-179, gnl|panTro1|chr9 (47989803-47990020) | |
| 1-179, gnl|rheMac2|chr14 (24625538-24625321) | |
| 1-179, gnl|rheMac2|chr9 (11408690-11408874) | |
| 1-179, gnl|rn3|chr17 (82874584-82874768) | |
| 1-179, gnl|rn3|chr3 (75257500-75257283) | |
| 1-179, gnl|tetNig1|chr13 (9851210-9851022) | |
| 1-179, gnl|tetNig1|chrUn_random (29893505-29893685) | |
| 1-179, gnl|xenTro1|scaffold_314 (485767-485584) | |
| 1-179, gnl|xenTro1|scaffold_552 (30921-30714) | |
| 310-446, gnl|bosTau2|chr13 (5698180-5698044) | |
| 310-446, gnl|canFam2|chr2 (27917350-27917180) | |
| 310-446, gnl|danRer3|chr4 (26845755-26845896) | |
| 310-446, gnl|dasNov1|scaffold_832 (74851-75020) | |
| 310-446, gnl|echTel1|scaffold_324151 (8267-8437) | |
| 310-446, gnl|fr1|chrUn (104042576-104042410) | |
| 310-446, gnl|galGal2|chr1 (4396116-4395946) | |
| 310-446, gnl|hg17|chr10 (11339706-11339876) | |
| 310-446, gnl|Hg17|chr10 (11339706-11339842) | |
| 310-446, gnl|loxAfr1|scaffold_1017 (84206-84036) | |
| 310-446, gnl|mm7|chr2 (6533098-6532928) | |
| 310-446, gnl|Mm7|chr2 (6533096-6532960) | |
| 310-446, gnl|monDom2|scaffold_30 (9862135-9862305) | |
| 310-446, gnl|oryCun1|scaffold_202279 (129063-128894) | |
| 310-446, gnl|panTro1|chr8 (11480610-11480780) | |
| 310-446, gnl|rheMac2|chr9 (11499667-11499837) | |
| 310-446, gnl|rn3|chr17 (82969735-82969905) | |
| 310-446, gnl|tetNig1|chrUn_random (29908013-29908157) | |
| 310-446, gnl|xenTro1|scaffold_314 (403455-403285) | |
| 524-687, gnl|bosTau2|chr15 (48844562-48844725) | |
| 524-687, gnl|Hg17|chr11 (47460986-47460823) | |
| 524-687, gnl|Mm7|chr2 (90855415-90855578) | |
| 762-893, gnl|bosTau2|chr15 (48848608-48848739) | |
| 762-893, gnl|canFam2|chr18 (45208857-45208711) | |
| 762-893, gnl|danRer3|chr7 (28748981-28749117) | |
| 762-893, gnl|dasNov1|scaffold_2577 (42589-42722) | |
| 762-893, gnl|echTel1|scaffold_308749 (117849-117703) | |
| 762-893, gnl|fr1|chrUn (314563553-314563685) | |
| 762-893, gnl|galGal2|chr5 (20132795-20132652) | |
| 762-893, gnl|hg17|chr11 (47455415-47455562) | |
| 762-893, gnl|Hg17|chr11 (47455555-47455424) | |
| 762-893, gnl|loxAfr1|scaffold_7460 (72431-72285) | |
| 762-893, gnl|mm7|chr2 (90859026-90858881) | |
| 762-893, gnl|Mm7|chr2 (90858886-90859017) | |
| 762-893, gnl|monDom2|scaffold_33 (13317794-13317935) | |
| 762-893, gnl|oryCun1|scaffold_179957 (34873-34727) | |
| 762-893, gnl|panTro1|chr9 (47978254-47978401) | |
| 762-893, gnl|rheMac2|chr14 (24637725-24637578) | |
| 762-893, gnl|rn3|chr3 (75266604-75266458) | |
| 762-893, gnl|tetNig1|chr13 (9858620-9858478) | |
| 762-893, gnl|xenTro1|scaffold_552 (34178-34037) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-179, gnl|bosTau2|chr15 (48838841-48839019) | |
| 1-179, gnl|canFam2|chr18 (45197059-45196846) | |
| 1-179, gnl|canFam2|chr2 (28004845-28004661) | |
| 1-179, gnl|danRer3|chr16 (27250422-27250238) | |
| 1-179, gnl|danRer3|chr7 (28758381-28758605) | |
| 1-179, gnl|dasNov1|scaffold_255114 (3786-3607) | |
| 1-179, gnl|dasNov1|scaffold_62459 (1967-2147) | |
| 1-179, gnl|echTel1|scaffold_317777 (360-176) | |
| 1-179, gnl|echTel1|scaffold_317777 (181-373) | |
| 1-179, gnl|fr1|chrUn (104066543-104066362) | |
| 1-179, gnl|fr1|chrUn (314566027-314566222) | |
| 1-179, gnl|galGal2|chr1 (4465021-4464838) | |
| 1-179, gnl|galGal2|chr5 (20124688-20124472) | |
| 1-179, gnl|hg17|chr10 (11247475-11247659) | |
| 1-179, gnl|hg17|chr11 (47466956-47467173) | |
| 1-179, gnl|Hg17|chr11 (47467142-47466964) | |
| 1-179, gnl|loxAfr1|scaffold_7460 (56582-56766) | |
| 1-179, gnl|loxAfr1|scaffold_7460 (56768-56552) | |
| 1-179, gnl|mm7|chr2 (6638868-6638684) | |
| 1-179, gnl|mm7|chr2 (90849494-90849277) | |
| 1-179, gnl|Mm7|chr2 (90849306-90849484) | |
| 1-179, gnl|monDom2|scaffold_33 (13328468-13328288) | |
| 1-179, gnl|monDom2|scaffold_33 (13328281-13328498) | |
| 1-179, gnl|oryCun1|scaffold_206007 (142852-143036) | |
| 1-179, gnl|oryCun1|scaffold_206007 (143031-142839) | |
| 1-179, gnl|panTro1|chr8 (11387707-11387891) | |
| 1-179, gnl|panTro1|chr9 (47989803-47990020) | |
| 1-179, gnl|rheMac2|chr14 (24625538-24625321) | |
| 1-179, gnl|rheMac2|chr9 (11408690-11408874) | |
| 1-179, gnl|rn3|chr17 (82874584-82874768) | |
| 1-179, gnl|rn3|chr3 (75257500-75257283) | |
| 1-179, gnl|tetNig1|chr13 (9851210-9851022) | |
| 1-179, gnl|tetNig1|chrUn_random (29893505-29893685) | |
| 1-179, gnl|xenTro1|scaffold_314 (485767-485584) | |
| 1-179, gnl|xenTro1|scaffold_552 (30921-30714) | |
| 310-446, gnl|bosTau2|chr13 (5698180-5698044) | |
| 310-446, gnl|canFam2|chr2 (27917350-27917180) | |
| 310-446, gnl|danRer3|chr4 (26845755-26845896) | |
| 310-446, gnl|dasNov1|scaffold_832 (74851-75020) | |
| 310-446, gnl|echTel1|scaffold_324151 (8267-8437) | |
| 310-446, gnl|fr1|chrUn (104042576-104042410) | |
| 310-446, gnl|galGal2|chr1 (4396116-4395946) | |
| 310-446, gnl|hg17|chr10 (11339706-11339876) | |
| 310-446, gnl|Hg17|chr10 (11339706-11339842) | |
| 310-446, gnl|loxAfr1|scaffold_1017 (84206-84036) | |
| 310-446, gnl|mm7|chr2 (6533098-6532928) | |
| 310-446, gnl|Mm7|chr2 (6533096-6532960) | |
| 310-446, gnl|monDom2|scaffold_30 (9862135-9862305) | |
| 310-446, gnl|oryCun1|scaffold_202279 (129063-128894) | |
| 310-446, gnl|panTro1|chr8 (11480610-11480780) | |
| 310-446, gnl|rheMac2|chr9 (11499667-11499837) | |
| 310-446, gnl|rn3|chr17 (82969735-82969905) | |
| 310-446, gnl|tetNig1|chrUn_random (29908013-29908157) | |
| 310-446, gnl|xenTro1|scaffold_314 (403455-403285) | |
| 524-687, gnl|bosTau2|chr15 (48844562-48844725) | |
| 524-687, gnl|Hg17|chr11 (47460986-47460823) | |
| 524-687, gnl|Mm7|chr2 (90855415-90855578) | |
| 762-893, gnl|bosTau2|chr15 (48848608-48848739) | |
| 762-893, gnl|canFam2|chr18 (45208857-45208711) | |
| 762-893, gnl|danRer3|chr7 (28748981-28749117) | |
| 762-893, gnl|dasNov1|scaffold_2577 (42589-42722) | |
| 762-893, gnl|echTel1|scaffold_308749 (117849-117703) | |
| 762-893, gnl|fr1|chrUn (314563553-314563685) | |
| 762-893, gnl|galGal2|chr5 (20132795-20132652) | |
| 762-893, gnl|hg17|chr11 (47455415-47455562) | |
| 762-893, gnl|Hg17|chr11 (47455555-47455424) | |
| 762-893, gnl|loxAfr1|scaffold_7460 (72431-72285) | |
| 762-893, gnl|mm7|chr2 (90859026-90858881) | |
| 762-893, gnl|Mm7|chr2 (90858886-90859017) | |
| 762-893, gnl|monDom2|scaffold_33 (13317794-13317935) | |
| 762-893, gnl|oryCun1|scaffold_179957 (34873-34727) | |
| 762-893, gnl|panTro1|chr9 (47978254-47978401) | |
| 762-893, gnl|rheMac2|chr14 (24637725-24637578) | |
| 762-893, gnl|rn3|chr3 (75266604-75266458) | |
| 762-893, gnl|tetNig1|chr13 (9858620-9858478) | |
| 762-893, gnl|xenTro1|scaffold_552 (34178-34037) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |