Non-Coding RNA Search

Ss1.1-Pig4-TMW8025E19.5

Sequence:


               
               ACATATATATTTTTACTATTAAAAATACTCAGTTTTTTTTAATAAAGTAGAACTTGATTT
CATGTTTTATATGAGACATTTACCAAAAAAAAGAAAGAAAAGAAAAAAATGAAGGAGGAC
GACTATCTTTTAAAAACCTTTTAACTTGAGCCTGCTGGTTAAGCTTCTGAATATCGGGAC
TGCTGAGAGATGTAAATCAGATTTTTCTTTAAGCTGGTGCAGTGCAGGCCCAGCCAGCAG
TGATCCCCTGAGGCCTTACTGGAAACCTTGGAGTTTGTTTATTTTTCTACCACACTGTTT
TGTTTTTAGTTTTTTTGTGATTACGCACAATATGTGGTTAATGTGTTTGAAGATGTGAAT
TACGGAAGTCTGGTGAGAGTTGGGGTGGGTGTGTGGTGACTCAGAATGTGTAAACCATCG
GGTAGATGGGGGGTTCTTTGGCTGAGATCAGGGGGTTCATTCAGACCCCTGTTGGTGGAA
GCCCTTGGCCAGAAATACTTGCCAGTACTGCCAAAGCACTGCTGTGAAACACCTTTAAAT
GATTGTCTTTTGGTTGTTAATATTTTGTTGTTGTTGTTCCTTTATTCTTACTTGCATGAT
TTGGCATCAGAATTTGTTACCTCTGTATTGTTTGAGGGTTGAAATAAAACAGTATGGTGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATATATATTTTTACTATTAAAAATACTCAGTTTTTTTTAATAAAGTAGAACTTGATTT
CATGTTTTATATGAGACATTTACCAAAAAAAAGAAAGAAAAGAAAAAAATGAAGGAGGAC
GACTATCTTTTAAAAACCTTTTAACTTGAGCCTGCTGGTTAAGCTTCTGAATATCGGGAC
TGCTGAGAGATGTAAATCAGATTTTTCTTTAAGCTGGTGCAGTGCAGGCCCAGCCAGCAG
TGATCCCCTGAGGCCTTACTGGAAACCTTGGAGTTTGTTTATTTTTCTACCACACTGTTT
TGTTTTTAGTTTTTTTGTGATTACGCACAATATGTGGTTAATGTGTTTGAAGATGTGAAT
TACGGAAGTCTGGTGAGAGTTGGGGTGGGTGTGTGGTGACTCAGAATGTGTAAACCATCG
GGTAGATGGGGGGTTCTTTGGCTGAGATCAGGGGGTTCATTCAGACCCCTGTTGGTGGAA
GCCCTTGGCCAGAAATACTTGCCAGTACTGCCAAAGCACTGCTGTGAAACACCTTTAAAT
GATTGTCTTTTGGTTGTTAATATTTTGTTGTTGTTGTTCCTTTATTCTTACTTGCATGAT
TTGGCATCAGAATTTGTTACCTCTGTATTGTTTGAGGGTTGAAATAAAACAGTATGGTGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-674, gnl|bosTau2|chr5 (24494583-24493907)
               

               
               3-674, gnl|Hg17|chr2 (88889065-88889708)
               

               
               3-674, gnl|Mm7|chr6 (70784342-70783727)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-674, gnl|bosTau2|chr5 (24494583-24493907)
               

               
               3-674, gnl|Hg17|chr2 (88889065-88889708)
               

               
               3-674, gnl|Mm7|chr6 (70784342-70783727)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	3-674, gnl\|bosTau2\|chr5 (24494583-24493907)
	3-674, gnl\|Hg17\|chr2 (88889065-88889708)
	3-674, gnl\|Mm7\|chr6 (70784342-70783727)

	elu (0.385356)
	ill (0.351185)
	lnt (0.284616)
	ton (0.1755)
	spl (0.143184)
	cly (0.120642)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)