Non-Coding RNA Search

Ss1.1-Pig4-TMW8025E22.5

Sequence:


               
               CAACGGGCCACGGGAATTTTACGAAAAATTATCGATCACCAAGCCTAACAACGCCTACGA
ATTTGGTCAGGTTATAAACGCCATCAGCACGAGGAAAGATAAAGAAGCCTGTGCGCACCT
GTTATCCATCACGGAACCGAAAGATCTGCCGGTGTTGCTGAGCAACAAACTTGAAGGGGA
TGCATTCATCCTTCTCATTCAGTCTCTGAAAACCCATCTTATTGAGAAAGATCCCTCTTT
GGTGTATCAGCATCTTCTGTATCTGAGTAAAGCAGAAAGGTTTAAGATGACGTTAACTCT
GATTAGGAAGGGCCAAGAGGAGCAGATCCAGCAGCTCTTTGATGACCTCTCAGACACCCC
AAGCAAACACTTCACCTTGGAAGATGTACAGGCCCTCAAAAGGCAGTATGAGCCTTAAGT
CAAGATTATTGTTAGATTGGCTTCCAGGCATGAATGTGTTCCAGCCTGCTAATGAGATGG
TATGGCAATAGAGTTGCGTGGATAAAACCTGCCTTAGAAAAGATCCCTTGGTCTGGACTC
TAAAATATTTTTACTTATTTTTATACATAGAACACATATATTCTACAATCTCCTTTTTAT
TCGCTGTAAATATTTTCTTATATACCAGAGCTAACATCTTTATATTTAATAATAAGTATG
TTTGGAACTTGTTAAAATACATTTTAATTTATATTATACATTTTCTTTCCATAGCTTGTT
AAAAATTTAAGTTATGTTTCTTTGGGTTCTAGAGTCCTCTTAAGTCTGATAGAAGTCTAT
TTCTTCAAAATTTATTTTTAAAAGTGAAAATCATTACCCATGATTCTTACATCACCTTTA
TTTTCCTGCTAAGATAGTATAAACCCCATTTTATACTACTGGTGGACTATAGTCCACAAA
GATGAAATGCAGCAATATGAAATGATTATTAAATGAGTTGTGATTATTTAGAGCTATAAG
AGGAACTTATTTTTGTCTAAAATGGAAGTATTGCCTGATAATTAAGAGCAGAAATTGCCA
AAAATTCTACCACTTTTTAACTAGATTTTTAAAAGCTAATTTCCATTATGGATTGCTGAC
ATAAGTGATAACAAAACCACTGCTATATAAAAGCAACTAAACCTGCATTTCTCTTTAAAC
TGTCACTTCCACGTTTTTCTCCATGTTCTATGTCTTCTGTCTCTTTTTTTTTCCCCTCCT
TTAAGCATGATCAGACTTACTCCCTCCGTGTAGAAGGGAAAGTGAAGACCGGGTCGTATG
GAGAGGTCCCTTGTTAACTGGGTCAAAGCCCAAGTGTTTCTTACAATAAAACATTCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGGGCCACGGGAATTTTACGAAAAATTATCGATCACCAAGCCTAACAACGCCTACGA
ATTTGGTCAGGTTATAAACGCCATCAGCACGAGGAAAGATAAAGAAGCCTGTGCGCACCT
GTTATCCATCACGGAACCGAAAGATCTGCCGGTGTTGCTGAGCAACAAACTTGAAGGGGA
TGCATTCATCCTTCTCATTCAGTCTCTGAAAACCCATCTTATTGAGAAAGATCCCTCTTT
GGTGTATCAGCATCTTCTGTATCTGAGTAAAGCAGAAAGGTTTAAGATGACGTTAACTCT
GATTAGGAAGGGCCAAGAGGAGCAGATCCAGCAGCTCTTTGATGACCTCTCAGACACCCC
AAGCAAACACTTCACCTTGGAAGATGTACAGGCCCTCAAAAGGCAGTATGAGCCTTAAGT
CAAGATTATTGTTAGATTGGCTTCCAGGCATGAATGTGTTCCAGCCTGCTAATGAGATGG
TATGGCAATAGAGTTGCGTGGATAAAACCTGCCTTAGAAAAGATCCCTTGGTCTGGACTC
TAAAATATTTTTACTTATTTTTATACATAGAACACATATATTCTACAATCTCCTTTTTAT
TCGCTGTAAATATTTTCTTATATACCAGAGCTAACATCTTTATATTTAATAATAAGTATG
TTTGGAACTTGTTAAAATACATTTTAATTTATATTATACATTTTCTTTCCATAGCTTGTT
AAAAATTTAAGTTATGTTTCTTTGGGTTCTAGAGTCCTCTTAAGTCTGATAGAAGTCTAT
TTCTTCAAAATTTATTTTTAAAAGTGAAAATCATTACCCATGATTCTTACATCACCTTTA
TTTTCCTGCTAAGATAGTATAAACCCCATTTTATACTACTGGTGGACTATAGTCCACAAA
GATGAAATGCAGCAATATGAAATGATTATTAAATGAGTTGTGATTATTTAGAGCTATAAG
AGGAACTTATTTTTGTCTAAAATGGAAGTATTGCCTGATAATTAAGAGCAGAAATTGCCA
AAAATTCTACCACTTTTTAACTAGATTTTTAAAAGCTAATTTCCATTATGGATTGCTGAC
ATAAGTGATAACAAAACCACTGCTATATAAAAGCAACTAAACCTGCATTTCTCTTTAAAC
TGTCACTTCCACGTTTTTCTCCATGTTCTATGTCTTCTGTCTCTTTTTTTTTCCCCTCCT
TTAAGCATGATCAGACTTACTCCCTCCGTGTAGAAGGGAAAGTGAAGACCGGGTCGTATG
GAGAGGTCCCTTGTTAACTGGGTCAAAGCCCAAGTGTTTCTTACAATAAAACATTCAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61813749|ref|XP_608569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61813749|ref|XP_608569.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               285-1320, gnl|bosTau2|chr14 (38037334-38038385)
               

               
               285-1320, gnl|Hg17|chr8 (101322293-101323303)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-1320, gnl|bosTau2|chr14 (38037334-38038385)
               

               
               285-1320, gnl|Hg17|chr8 (101322293-101323303)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.259471)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	285-1320, gnl\|bosTau2\|chr14 (38037334-38038385)
	285-1320, gnl\|Hg17\|chr8 (101322293-101323303)