Non-Coding RNA Search

Ss1.1-Pig4-TMW8025F04.3

Sequence:


               
               CTGCTGTGGCGAGGGTTCAGCCCTGGCTCAGGAATTTACATAAGCCACAGGTGTGGCCAA
AAAAAATTATGCTTAATGAATTCAGCAAAACAATTTGTGCCTGCACTCTTGTGAAGTCTC
TGTATCCTCGTCCTGAGAAGCTTCAGCTTAGCCATTTTCCTTCTCAGCTTCTCGAGATAC
TTGAAATAGACACAGCTTCACACGAGAGGGTGGTTGAAGCATGAGATCTGGGAGGACAGA
CTGTTTTCAGTGTCCAGGGGAAGATTATATAGACATGAATTCATTATGTGAGGATTGTGG
CCACTACCTCTCTGTCAAGTCTTCTAGCTCTTACCACATGAGGGAATACAAGGTGCTTCC
TAAGAATTTTCTTCCTTACTGGCTACGAAGAGTTTAGAGACGTGGCCTTTGAAATGTGTC
TTGTAACCAGCACAGCAAGAAAAATTCTAGTTGGGCATCTGTTGGTAAGGAAGGGGTGTA
ACATAATGCAGTAGAGAGAACTCTTTTGAGAGTCCAAACCCTGATGCTAGAAGCTTTTCT
TTTTCCTCCCCACCTTGTGTTGAATTTGAAAAAGGCCCACCACAAATGCTTTTCTATTTT
CTGCATTAAAGCAGCTTTTGAATGTGATCTTGAGAAACCAAGAGGTGATGCTACTTGTCT
GGTGCTTCTGGTGCCTCCTGGTTCTGCCTTCTGAGGGTTTGGCTGAAAAGGTATTTCTCC
ACTGAGCACAGGGGAAGAGATCATCTTTCACATCTGCTGTGATCTGCCTTGCACACCCCG
GATAAGGGCATGATGCTGCTCCTCACTTTGTTGTTGCCAGACTGCCAGGAGCAGTCACTT
AGCCCTGAATGTCTTGACCATGTTGTTTTTTAATCACTGTGACCCTTGATTTTAAAGTAT
AGGCCAAAGTGTTGTAAAGCACCTTGGCCAAGAAATGGTGGAGGGGGCAGAGCATTCCAA
CTCAGTAAGTCCTGAGGGGACTACACACCAGCTGAACTGCCACCACTGCCCTGATGAACT
CAACTGTTTATGATTTCATCTTCTTTCTTTTGTATCTACATCCACACAATTCCCAATGTC
AGATGTTACTGCGTGAATAAAGTAAGGATCAGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGTGGCGAGGGTTCAGCCCTGGCTCAGGAATTTACATAAGCCACAGGTGTGGCCAA
AAAAAATTATGCTTAATGAATTCAGCAAAACAATTTGTGCCTGCACTCTTGTGAAGTCTC
TGTATCCTCGTCCTGAGAAGCTTCAGCTTAGCCATTTTCCTTCTCAGCTTCTCGAGATAC
TTGAAATAGACACAGCTTCACACGAGAGGGTGGTTGAAGCATGAGATCTGGGAGGACAGA
CTGTTTTCAGTGTCCAGGGGAAGATTATATAGACATGAATTCATTATGTGAGGATTGTGG
CCACTACCTCTCTGTCAAGTCTTCTAGCTCTTACCACATGAGGGAATACAAGGTGCTTCC
TAAGAATTTTCTTCCTTACTGGCTACGAAGAGTTTAGAGACGTGGCCTTTGAAATGTGTC
TTGTAACCAGCACAGCAAGAAAAATTCTAGTTGGGCATCTGTTGGTAAGGAAGGGGTGTA
ACATAATGCAGTAGAGAGAACTCTTTTGAGAGTCCAAACCCTGATGCTAGAAGCTTTTCT
TTTTCCTCCCCACCTTGTGTTGAATTTGAAAAAGGCCCACCACAAATGCTTTTCTATTTT
CTGCATTAAAGCAGCTTTTGAATGTGATCTTGAGAAACCAAGAGGTGATGCTACTTGTCT
GGTGCTTCTGGTGCCTCCTGGTTCTGCCTTCTGAGGGTTTGGCTGAAAAGGTATTTCTCC
ACTGAGCACAGGGGAAGAGATCATCTTTCACATCTGCTGTGATCTGCCTTGCACACCCCG
GATAAGGGCATGATGCTGCTCCTCACTTTGTTGTTGCCAGACTGCCAGGAGCAGTCACTT
AGCCCTGAATGTCTTGACCATGTTGTTTTTTAATCACTGTGACCCTTGATTTTAAAGTAT
AGGCCAAAGTGTTGTAAAGCACCTTGGCCAAGAAATGGTGGAGGGGGCAGAGCATTCCAA
CTCAGTAAGTCCTGAGGGGACTACACACCAGCTGAACTGCCACCACTGCCCTGATGAACT
CAACTGTTTATGATTTCATCTTCTTTCTTTTGTATCTACATCCACACAATTCCCAATGTC
AGATGTTACTGCGTGAATAAAGTAAGGATCAGTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               750-1001, no strand, RNAz p=0.981076

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               750-1001, no strand, RNAz p=0.981076

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               61-1116, gnl|bosTau2|chr13 (47904626-47905707)
               

               
               61-1116, gnl|Hg17|chr20 (32140867-32139786)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-1116, gnl|bosTau2|chr13 (47904626-47905707)
               

               
               61-1116, gnl|Hg17|chr20 (32140867-32139786)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	61-1116, gnl\|bosTau2\|chr13 (47904626-47905707)
	61-1116, gnl\|Hg17\|chr20 (32140867-32139786)