Ss1.1-Pig4-TMW8025F08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATTGCAAGAATACGTTTCTGTGGACAGAGTTCACAGACCGAACCTTGGCCCGTTGCCC TCACTGCAGGAAAGTGTCATCTATTGGGCGCAGATATCCACGAAAGAGATGTATCTGCTG CTTCTTGCTTGGCTTACTCTTGGCAGTCACTGCCACTGGCCTTGCTTTTGGCACATGGAA ACATGCACGGCGATATGGAGGCATCTATGCAGCCTGGGCATTTGTCATCCTGTTGGCTGT GCTGTGTTTGGGCCGGGCCCTCTATTGGGCCTGTATGAAGGTCAGCCACCCTGTCCAGAA CTTCTCCTGAGCCCCACGACGACCCACAGACTGTGCCTGTCCCCTCCCTGGTGGGGACAG TGACACTATAAAGGGAGCAGTGGTAAAAGGCTCCCTGGGCTTCTATCGGGGAGCCAAGCA GCTGCCTTTCTTTTCCCTGGGGAGAGGTAGGAAGGAGCCAGGCCCTCACCTAGGTTTGGA GGAGTAGGTAAGACCACTACTGGCCATCTGCTTCTCTCCAACAGTTGCCGTGTTTAGGGT GAAGTAGGTGAAATATTGCCCCTAAACCTGGGTCCTAAAAGATGGTTCTTAGCCTTGTCC TTCCTATATGCTCCCTGAGAGCCATTCCTGTCCCTTACACATTCCAGGGCAGGGTGGGGG TGGGTAGCCCTGGGGGGGTCTCCCTCCCTTGTGTGCACCATTAGGACCTTGCTGCTGCTA TTGCACTTCACCAGGGGCTGGCTCTGGTCTCAGCACCCTCAGTCTCCTCTCCCCCCATTC TGTGTCCTGTGGGGGTGGGGTCAGCCGCTGCTCTGTACAGAACCACAGGAACTGATGTAT ATAACTATTTAATGTGGGGTATGGTCCCCTGGTCCTGAATTTCCCATAATTCCTCCTTTC AGCCTTACCCCCCAGTTGAAGTATTTAACTGGGCTGGGTAGGGTTGCTCTGTCATGGGAG AGGTTAGGGACTCATCCTGTGCTTGTAAATAAATAAGGTCATGACTGTCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATTGCAAGAATACGTTTCTGTGGACAGAGTTCACAGACCGAACCTTGGCCCGTTGCCC TCACTGCAGGAAAGTGTCATCTATTGGGCGCAGATATCCACGAAAGAGATGTATCTGCTG CTTCTTGCTTGGCTTACTCTTGGCAGTCACTGCCACTGGCCTTGCTTTTGGCACATGGAA ACATGCACGGCGATATGGAGGCATCTATGCAGCCTGGGCATTTGTCATCCTGTTGGCTGT GCTGTGTTTGGGCCGGGCCCTCTATTGGGCCTGTATGAAGGTCAGCCACCCTGTCCAGAA CTTCTCCTGAGCCCCACGACGACCCACAGACTGTGCCTGTCCCCTCCCTGGTGGGGACAG TGACACTATAAAGGGAGCAGTGGTAAAAGGCTCCCTGGGCTTCTATCGGGGAGCCAAGCA GCTGCCTTTCTTTTCCCTGGGGAGAGGTAGGAAGGAGCCAGGCCCTCACCTAGGTTTGGA GGAGTAGGTAAGACCACTACTGGCCATCTGCTTCTCTCCAACAGTTGCCGTGTTTAGGGT GAAGTAGGTGAAATATTGCCCCTAAACCTGGGTCCTAAAAGATGGTTCTTAGCCTTGTCC TTCCTATATGCTCCCTGAGAGCCATTCCTGTCCCTTACACATTCCAGGGCAGGGTGGGGG TGGGTAGCCCTGGGGGGGTCTCCCTCCCTTGTGTGCACCATTAGGACCTTGCTGCTGCTA TTGCACTTCACCAGGGGCTGGCTCTGGTCTCAGCACCCTCAGTCTCCTCTCCCCCCATTC TGTGTCCTGTGGGGGTGGGGTCAGCCGCTGCTCTGTACAGAACCACAGGAACTGATGTAT ATAACTATTTAATGTGGGGTATGGTCCCCTGGTCCTGAATTTCCCATAATTCCTCCTTTC AGCCTTACCCCCCAGTTGAAGTATTTAACTGGGCTGGGTAGGGTTGCTCTGTCATGGGAG AGGTTAGGGACTCATCCTGTGCTTGTAAATAAATAAGGTCATGACTGTCAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 167-285, - strand, RNAz p=0.885014 | |
| 326-557, - strand, RNAz p=0.998857 | |
| 598-715, - strand, RNAz p=0.78326 | |
| 870-1006, + strand, RNAz p=0.997243 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 167-285, - strand, RNAz p=0.885014 | |
| 326-557, - strand, RNAz p=0.998857 | |
| 598-715, - strand, RNAz p=0.78326 | |
| 870-1006, + strand, RNAz p=0.997243 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 898-994, + strand, RNAmicro p=0.999382 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 326-551, AJ820035 KN206 Bos sp. cDNA clone C0006017d15, mRNA sequence (emb|AJ820035.1|), blast E-value=0, identity=94.27% | |
| 326-551, 727800 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB465735.1|), blast E-value=0, identity=94.27% | |
| 326-551, 960043 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771677.1|), blast E-value=0, identity=94.27% | |
| 326-551, 4106918 BARC 9BOV Bos taurus cDNA clone 9BOV33_P13 3', mRNA (gb|CK975529.1|), blast E-value=0, identity=94.27% | |
| 326-551, 1155255 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN276119.1|), blast E-value=0, identity=94.27% | |
| 326-551, 1158327 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN278976.1|), blast E-value=0, identity=94.27% | |
| 870-1006, AJ747852 reverse - unstimulated minus stimulated macrophage Sus (emb|AJ747852.1|), blast E-value=0, identity=100% | |
| 872-1006, 4083692 BARC 9BOV Bos taurus cDNA clone 9BOV27_H21 3', mRNA (gb|CK968459.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 872-1006, 4106918 BARC 9BOV Bos taurus cDNA clone 9BOV33_P13 3', mRNA (gb|CK975529.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 872-1006, 000923BEMN016634HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY097615.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 870-1006, PADT0811017_J19F porcine adipose tissue cDNA library (PADT) Sus (gb|EB418257.1|), blast E-value=0, identity=100% | |
| 870-995, PADT0811017_J19R porcine adipose tissue cDNA library (PADT) Sus (gb|EB418258.1|), blast E-value=0, identity=100% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 326-551, AJ820035 KN206 Bos sp. cDNA clone C0006017d15, mRNA sequence (emb|AJ820035.1|), blast E-value=0, identity=94.27% | |
| 326-551, 727800 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB465735.1|), blast E-value=0, identity=94.27% | |
| 326-551, 960043 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK771677.1|), blast E-value=0, identity=94.27% | |
| 326-551, 4106918 BARC 9BOV Bos taurus cDNA clone 9BOV33_P13 3', mRNA (gb|CK975529.1|), blast E-value=0, identity=94.27% | |
| 326-551, 1155255 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN276119.1|), blast E-value=0, identity=94.27% | |
| 326-551, 1158327 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN278976.1|), blast E-value=0, identity=94.27% | |
| 870-1006, AJ747852 reverse - unstimulated minus stimulated macrophage Sus (emb|AJ747852.1|), blast E-value=0, identity=100% | |
| 872-1006, 4083692 BARC 9BOV Bos taurus cDNA clone 9BOV27_H21 3', mRNA (gb|CK968459.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 872-1006, 4106918 BARC 9BOV Bos taurus cDNA clone 9BOV33_P13 3', mRNA (gb|CK975529.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 872-1006, 000923BEMN016634HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY097615.1|), blast E-value=5.04467e-44, identity=93.43% | |
| 870-1006, PADT0811017_J19F porcine adipose tissue cDNA library (PADT) Sus (gb|EB418257.1|), blast E-value=0, identity=100% | |
| 870-995, PADT0811017_J19R porcine adipose tissue cDNA library (PADT) Sus (gb|EB418258.1|), blast E-value=0, identity=100% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL137727, + |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 167-1006, gnl|bosTau2|chr10 (16373539-16374379) | |
| 167-1006, gnl|Hg17|chr14 (19996701-19995860) | |
| 167-1006, gnl|Mm7|chr14 (46261934-46261116) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 167-1006, gnl|bosTau2|chr10 (16373539-16374379) | |
| 167-1006, gnl|Hg17|chr14 (19996701-19995860) | |
| 167-1006, gnl|Mm7|chr14 (46261934-46261116) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cga (0.279096) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |