Non-Coding RNA Search

Ss1.1-Pig4-TMW8025F09.5

Sequence:


               
               CTTGAGATGAACCTTATGCATGCACCTCAAGTCGCAGACGCTATTCTAGGGAATCAGATG
TTCACGCATTATGACCGGGCTCATATCGCTCAGCTGTGTGAAAAGGCTGGCCTCTTGCAG
CGTGCATTAGAACACTTCACTGACTTATATGATATAAAGCGTGCCGTTGTTCACACACAT
CTTCTTAACCCCGAGTGGTTAGTGAATTACTTTGGGTCCTTATCAGTAGAAGACTCCCTG
GAATGCCTCAGGGCCATGCTATCTGCCAATATTCGACAGAATCTACAGATCTGTGTGCAA
GTGGCTTCTAAGTATCATGAACAGCTGTCAACTCAGTCTCTAATTGAACTATTCGAATCT
TTCAAGAGTTTTGAAGGTAATGAGTTATTTCCTGGGGTCCATTGTTAACTTTAGTCAAGA
CCCAGATGTGCACTTTAAATACATTCAGGCAGCTTGTAAGACTGGGCAGATCAAAGAAGT
AGAAAGAATCTGCAGAGAAAGCAACTGTTATGATCCTGAGCGAGTCAAGAATTTTCTCAA
GGAAGCGAAGCTAACAGATCAGTTACCACTTATCATTGTGTGTGATCGATTTGACTTTGT
CCATGATTTGGTGCTCTATTTATATAGAAATAATCTTCAAAAGTATATAGAGATATATGT
ACAGAAGGTGAATCCAAGTCGACTTCCTGTGGTAATTGGAGGATTACTTGATGTTGATTG
CTCTGAAGATGTCATTAAAAACTTGATTCTTGTTGTAAGAGGTCAATTCTCTACTGATGA
GCTTGTTGCTGAAGTTGAAAAAAGAAACAGATTGAAACTGCTTCTGCCTTGGCTGGAGGC
CAGAATTCATGAGGGCTGTGAAGAGCCTGCTACTCACAATGCATTAGCCAAAATCTACAT
AGACAGTAATAACAACCCAGAGAGATTTCTTCGAGAAAATCCTTATTATGACAGTCGTGT
TGTTGGAAAGTACTGTGAGAAGAGAGATCCACATCTGGCCTGTGTTGCTTATGAGCGTGG
CCAGTGTGATCTGGAACTTATTAATGTTTGCAATGAGAATTCTCTCTTCAAAAGTCTTTC
CCGCTATCTGGTACGCAGAAAGGATCCAGAATTGTGGGGTAGTGTGCTGCTGGAAAGCAA
TCCTTACAGAAGACCCCTGATCGATCAGGTTGTACAGACAGCCTTGTCTGAGACTCAGGA
CCCTGAAGAAGTGTCAGTAACTGTCAAGGCTTTTATGACTGCAGACCTTCCTAATGAACT
CATTGAACTGCTGGAGAAAATTGTCCTTGATAACTCTGTCTTCAGTGAACACAGGAATCT
GCAAAATCTTCTGATCCTCACTGCAATCAAAGCTGACCGTACCCGTGTTATGGAATATAT
TAACCGCCTGGATAATTACGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAGATGAACCTTATGCATGCACCTCAAGTCGCAGACGCTATTCTAGGGAATCAGATG
TTCACGCATTATGACCGGGCTCATATCGCTCAGCTGTGTGAAAAGGCTGGCCTCTTGCAG
CGTGCATTAGAACACTTCACTGACTTATATGATATAAAGCGTGCCGTTGTTCACACACAT
CTTCTTAACCCCGAGTGGTTAGTGAATTACTTTGGGTCCTTATCAGTAGAAGACTCCCTG
GAATGCCTCAGGGCCATGCTATCTGCCAATATTCGACAGAATCTACAGATCTGTGTGCAA
GTGGCTTCTAAGTATCATGAACAGCTGTCAACTCAGTCTCTAATTGAACTATTCGAATCT
TTCAAGAGTTTTGAAGGTAATGAGTTATTTCCTGGGGTCCATTGTTAACTTTAGTCAAGA
CCCAGATGTGCACTTTAAATACATTCAGGCAGCTTGTAAGACTGGGCAGATCAAAGAAGT
AGAAAGAATCTGCAGAGAAAGCAACTGTTATGATCCTGAGCGAGTCAAGAATTTTCTCAA
GGAAGCGAAGCTAACAGATCAGTTACCACTTATCATTGTGTGTGATCGATTTGACTTTGT
CCATGATTTGGTGCTCTATTTATATAGAAATAATCTTCAAAAGTATATAGAGATATATGT
ACAGAAGGTGAATCCAAGTCGACTTCCTGTGGTAATTGGAGGATTACTTGATGTTGATTG
CTCTGAAGATGTCATTAAAAACTTGATTCTTGTTGTAAGAGGTCAATTCTCTACTGATGA
GCTTGTTGCTGAAGTTGAAAAAAGAAACAGATTGAAACTGCTTCTGCCTTGGCTGGAGGC
CAGAATTCATGAGGGCTGTGAAGAGCCTGCTACTCACAATGCATTAGCCAAAATCTACAT
AGACAGTAATAACAACCCAGAGAGATTTCTTCGAGAAAATCCTTATTATGACAGTCGTGT
TGTTGGAAAGTACTGTGAGAAGAGAGATCCACATCTGGCCTGTGTTGCTTATGAGCGTGG
CCAGTGTGATCTGGAACTTATTAATGTTTGCAATGAGAATTCTCTCTTCAAAAGTCTTTC
CCGCTATCTGGTACGCAGAAAGGATCCAGAATTGTGGGGTAGTGTGCTGCTGGAAAGCAA
TCCTTACAGAAGACCCCTGATCGATCAGGTTGTACAGACAGCCTTGTCTGAGACTCAGGA
CCCTGAAGAAGTGTCAGTAACTGTCAAGGCTTTTATGACTGCAGACCTTCCTAATGAACT
CATTGAACTGCTGGAGAAAATTGTCCTTGATAACTCTGTCTTCAGTGAACACAGGAATCT
GCAAAATCTTCTGATCCTCACTGCAATCAAAGCTGACCGTACCCGTGTTATGGAATATAT
TAACCGCCTGGATAATTACGATGC

Aligned organism(s): 33 entry(ies)

More info

Aligned organism(s): 33 entry(ies)

Help | Less info


               
               31-195, gnl|bosTau2|chr19 (4887540-4887704)
               

               
               31-195, gnl|canFam2|chr26 (33028270-33028077)
               

               
               31-195, gnl|canFam2|chr9 (37480456-37480626)
               

               
               31-195, gnl|danRer3|chr22 (28133768-28133946)
               

               
               31-195, gnl|danRer3|chr22 (28133945-28133775)
               

               
               31-195, gnl|dasNov1|scaffold_15025 (1140-1331)
               

               
               31-195, gnl|dasNov1|scaffold_2541 (56772-56954)
               

               
               31-195, gnl|echTel1|scaffold_289176 (38924-38731)
               

               
               31-195, gnl|echTel1|scaffold_321700 (3241-3051)
               

               
               31-195, gnl|fr1|chrUn (114607591-114607784)
               

               
               31-195, gnl|fr1|chrUn (152747882-152747696)
               

               
               31-195, gnl|galGal2|chr15 (44094-44282)
               

               
               31-195, gnl|galGal2|chr19 (6858888-6859084)
               

               
               31-195, gnl|hg17|chr17 (55098621-55098811)
               

               
               31-195, gnl|Hg17|chr17 (55098623-55098787)
               

               
               31-195, gnl|hg17|chr22 (17588288-17588481)
               

               
               31-195, gnl|mm7|chr11 (86789363-86789541)
               

               
               31-195, gnl|mm7|chr11 (86789535-86789352)
               

               
               31-195, gnl|Mm7|chr11 (86789531-86789367)
               

               
               31-195, gnl|monDom2|scaffold_141 (1870946-1871133)
               

               
               31-195, gnl|monDom2|scaffold_56 (2920597-2920409)
               

               
               31-195, gnl|oryCun1|scaffold_207879 (41227-41047)
               

               
               31-195, gnl|oryCun1|scaffold_207879 (41053-41223)
               

               
               31-195, gnl|panTro1|chr19_random (40845296-40845486)
               

               
               31-195, gnl|panTro1|chr23 (17562416-17562609)
               

               
               31-195, gnl|rheMac2|chr10 (63269837-63270030)
               

               
               31-195, gnl|rheMac2|chr16 (43905405-43905595)
               

               
               31-195, gnl|rn3|chr10 (75015699-75015881)
               

               
               31-195, gnl|rn3|chr10 (75015875-75015692)
               

               
               31-195, gnl|tetNig1|chr12 (3158840-3158660)
               

               
               31-195, gnl|tetNig1|chrUn_random (13597063-13596888)
               

               
               31-195, gnl|xenTro1|scaffold_169 (1676566-1676743)
               

               
               31-195, gnl|xenTro1|scaffold_38 (3222091-3221902)

Aligned organism(s): 33 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-195, gnl|bosTau2|chr19 (4887540-4887704)
               

               
               31-195, gnl|canFam2|chr26 (33028270-33028077)
               

               
               31-195, gnl|canFam2|chr9 (37480456-37480626)
               

               
               31-195, gnl|danRer3|chr22 (28133768-28133946)
               

               
               31-195, gnl|danRer3|chr22 (28133945-28133775)
               

               
               31-195, gnl|dasNov1|scaffold_15025 (1140-1331)
               

               
               31-195, gnl|dasNov1|scaffold_2541 (56772-56954)
               

               
               31-195, gnl|echTel1|scaffold_289176 (38924-38731)
               

               
               31-195, gnl|echTel1|scaffold_321700 (3241-3051)
               

               
               31-195, gnl|fr1|chrUn (114607591-114607784)
               

               
               31-195, gnl|fr1|chrUn (152747882-152747696)
               

               
               31-195, gnl|galGal2|chr15 (44094-44282)
               

               
               31-195, gnl|galGal2|chr19 (6858888-6859084)
               

               
               31-195, gnl|hg17|chr17 (55098621-55098811)
               

               
               31-195, gnl|Hg17|chr17 (55098623-55098787)
               

               
               31-195, gnl|hg17|chr22 (17588288-17588481)
               

               
               31-195, gnl|mm7|chr11 (86789363-86789541)
               

               
               31-195, gnl|mm7|chr11 (86789535-86789352)
               

               
               31-195, gnl|Mm7|chr11 (86789531-86789367)
               

               
               31-195, gnl|monDom2|scaffold_141 (1870946-1871133)
               

               
               31-195, gnl|monDom2|scaffold_56 (2920597-2920409)
               

               
               31-195, gnl|oryCun1|scaffold_207879 (41227-41047)
               

               
               31-195, gnl|oryCun1|scaffold_207879 (41053-41223)
               

               
               31-195, gnl|panTro1|chr19_random (40845296-40845486)
               

               
               31-195, gnl|panTro1|chr23 (17562416-17562609)
               

               
               31-195, gnl|rheMac2|chr10 (63269837-63270030)
               

               
               31-195, gnl|rheMac2|chr16 (43905405-43905595)
               

               
               31-195, gnl|rn3|chr10 (75015699-75015881)
               

               
               31-195, gnl|rn3|chr10 (75015875-75015692)
               

               
               31-195, gnl|tetNig1|chr12 (3158840-3158660)
               

               
               31-195, gnl|tetNig1|chrUn_random (13597063-13596888)
               

               
               31-195, gnl|xenTro1|scaffold_169 (1676566-1676743)
               

               
               31-195, gnl|xenTro1|scaffold_38 (3222091-3221902)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	31-195, gnl\|bosTau2\|chr19 (4887540-4887704)
	31-195, gnl\|canFam2\|chr26 (33028270-33028077)
	31-195, gnl\|canFam2\|chr9 (37480456-37480626)
	31-195, gnl\|danRer3\|chr22 (28133768-28133946)
	31-195, gnl\|danRer3\|chr22 (28133945-28133775)
	31-195, gnl\|dasNov1\|scaffold_15025 (1140-1331)
	31-195, gnl\|dasNov1\|scaffold_2541 (56772-56954)
	31-195, gnl\|echTel1\|scaffold_289176 (38924-38731)
	31-195, gnl\|echTel1\|scaffold_321700 (3241-3051)
	31-195, gnl\|fr1\|chrUn (114607591-114607784)
	31-195, gnl\|fr1\|chrUn (152747882-152747696)
	31-195, gnl\|galGal2\|chr15 (44094-44282)
	31-195, gnl\|galGal2\|chr19 (6858888-6859084)
	31-195, gnl\|hg17\|chr17 (55098621-55098811)
	31-195, gnl\|Hg17\|chr17 (55098623-55098787)
	31-195, gnl\|hg17\|chr22 (17588288-17588481)
	31-195, gnl\|mm7\|chr11 (86789363-86789541)
	31-195, gnl\|mm7\|chr11 (86789535-86789352)
	31-195, gnl\|Mm7\|chr11 (86789531-86789367)
	31-195, gnl\|monDom2\|scaffold_141 (1870946-1871133)
	31-195, gnl\|monDom2\|scaffold_56 (2920597-2920409)
	31-195, gnl\|oryCun1\|scaffold_207879 (41227-41047)
	31-195, gnl\|oryCun1\|scaffold_207879 (41053-41223)
	31-195, gnl\|panTro1\|chr19_random (40845296-40845486)
	31-195, gnl\|panTro1\|chr23 (17562416-17562609)
	31-195, gnl\|rheMac2\|chr10 (63269837-63270030)
	31-195, gnl\|rheMac2\|chr16 (43905405-43905595)
	31-195, gnl\|rn3\|chr10 (75015699-75015881)
	31-195, gnl\|rn3\|chr10 (75015875-75015692)
	31-195, gnl\|tetNig1\|chr12 (3158840-3158660)
	31-195, gnl\|tetNig1\|chrUn_random (13597063-13596888)
	31-195, gnl\|xenTro1\|scaffold_169 (1676566-1676743)
	31-195, gnl\|xenTro1\|scaffold_38 (3222091-3221902)