Ss1.1-Pig4-TMW8025F18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAATGCCACACCTCTCTCTACACTCTCCCTTAAACACTGGGATCAGGATGATGACTTT GAGTTTACTGGCAGCCACTTGACAGTGAGGAATGGCTACTCGTGTGTGCCTGTGGCTTTA GCAGAAGGCCTGGACATTAAGCTGAATACAGCAGTTCGGCAAGTTCGCTACACCGCTTCA GGATGTGAAGTGATAGCTGTGAATACCCGTTCCACAAGCCAAACTTTTATTTATAAATGC GATGCAGTTCTTTGTACCCTTCCCTTGGGTGTGCTGAAGCAACAGCCACCAGCTGTCCAG TTTGTGCCACCTCTTCCTGAGTGGAAAACATCTGCAGTCCAAAGGATGGGATTTGGCAAC CTTAACAAGGTTGTGTTGTGTTTTGACCGGGTATTCTGGGATCCAAGTGTCAATTTGTTC GGGCATGTAGGCAGTACGACTGCCAGCAGGGGTGAGCTGTTCCTGTTCTGGAACCTCTAT AAAGCTCCAATACTATTGGCACTAGTGGCAGGAGAAGCTGCTGGAATCATGGAAAACATA AGTGATGATGTGATTGTTGGCCGATGCCTGGCCATTCTCAAAGGGATTTTTGGTAGCAGT GCAGTGCCCCAGCCCAAGGAAACTGTGGTATCTCGCTGGCGAGCTGATCCCTGGGCCCGG GGCTCCTATTCTTATGTAGCTGCAGGATCATCTGGGAATGACTATGACTTAATGGCTCAG CCAATCACTCCTGGCCCCTCAATTCCAGGCGCCCCACAGCCTATTCCACGACTCTTCTTT GCTGGAGAGCATACAATCCGTAACTACCCAGCAACAGTCCATGGCGCTTTGCTGAGTGGG CTTCGAGAAGCAGGAAGGATTGCAGACCAGTTCTTGGGGGCCATGTACACTCTGCCTCGC CAGGCCACACCAAGCGTCCCTGCACAGCAGTCCCCAAGCATGTGAGACAGATGTGTTCTG CGGAAAGAAGCCAATGTGTCTTTTGCTGCATAAGCAAAGCTCTTCTAGCAATATCAGACT CTGCTGAGACTCACCCTGGCATCTGGACTCTGGATCAGCTACTGGAGCTCATGATGGTCA GGTAGCCAAGGAGCTCGCCTCCTTTGAGTGACTTAGAACTAGGGAGGCACTTGTCCATTA GCGTGGGAGTCTGTGTCCCTTATTAGGACTTGAGGCAAGTAAGTGCTCTGAGAGGACATC TTAGTTCCTTGTGTGTGGTGGTTTTTTTATATTTTGAGAATAAAACTTCTTAGAAAATTA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAATGCCACACCTCTCTCTACACTCTCCCTTAAACACTGGGATCAGGATGATGACTTT GAGTTTACTGGCAGCCACTTGACAGTGAGGAATGGCTACTCGTGTGTGCCTGTGGCTTTA GCAGAAGGCCTGGACATTAAGCTGAATACAGCAGTTCGGCAAGTTCGCTACACCGCTTCA GGATGTGAAGTGATAGCTGTGAATACCCGTTCCACAAGCCAAACTTTTATTTATAAATGC GATGCAGTTCTTTGTACCCTTCCCTTGGGTGTGCTGAAGCAACAGCCACCAGCTGTCCAG TTTGTGCCACCTCTTCCTGAGTGGAAAACATCTGCAGTCCAAAGGATGGGATTTGGCAAC CTTAACAAGGTTGTGTTGTGTTTTGACCGGGTATTCTGGGATCCAAGTGTCAATTTGTTC GGGCATGTAGGCAGTACGACTGCCAGCAGGGGTGAGCTGTTCCTGTTCTGGAACCTCTAT AAAGCTCCAATACTATTGGCACTAGTGGCAGGAGAAGCTGCTGGAATCATGGAAAACATA AGTGATGATGTGATTGTTGGCCGATGCCTGGCCATTCTCAAAGGGATTTTTGGTAGCAGT GCAGTGCCCCAGCCCAAGGAAACTGTGGTATCTCGCTGGCGAGCTGATCCCTGGGCCCGG GGCTCCTATTCTTATGTAGCTGCAGGATCATCTGGGAATGACTATGACTTAATGGCTCAG CCAATCACTCCTGGCCCCTCAATTCCAGGCGCCCCACAGCCTATTCCACGACTCTTCTTT GCTGGAGAGCATACAATCCGTAACTACCCAGCAACAGTCCATGGCGCTTTGCTGAGTGGG CTTCGAGAAGCAGGAAGGATTGCAGACCAGTTCTTGGGGGCCATGTACACTCTGCCTCGC CAGGCCACACCAAGCGTCCCTGCACAGCAGTCCCCAAGCATGTGAGACAGATGTGTTCTG CGGAAAGAAGCCAATGTGTCTTTTGCTGCATAAGCAAAGCTCTTCTAGCAATATCAGACT CTGCTGAGACTCACCCTGGCATCTGGACTCTGGATCAGCTACTGGAGCTCATGATGGTCA GGTAGCCAAGGAGCTCGCCTCCTTTGAGTGACTTAGAACTAGGGAGGCACTTGTCCATTA GCGTGGGAGTCTGTGTCCCTTATTAGGACTTGAGGCAAGTAAGTGCTCTGAGAGGACATC TTAGTTCCTTGTGTGTGGTGGTTTTTTTATATTTTGAGAATAAAACTTCTTAGAAAATTA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 164-371, gnl|bosTau2|chr2 (83140867-83140659) | |
| 164-371, gnl|Hg17|chr1 (23150769-23150978) | |
| 164-371, gnl|Mm7|chr4 (135932851-135932648) | |
| 483-612, gnl|bosTau2|chr2 (83138672-83138543) | |
| 483-612, gnl|canFam2|chr2 (79208413-79208234) | |
| 483-612, gnl|danRer3|chr17 (41878256-41878419) | |
| 483-612, gnl|dasNov1|scaffold_14752 (49196-49017) | |
| 483-612, gnl|echTel1|scaffold_317735 (128642-128464) | |
| 483-612, gnl|fr1|chrUn (217097153-217097294) | |
| 483-612, gnl|galGal2|chr23 (1631485-1631314) | |
| 483-612, gnl|hg17|chr1 (23153225-23153404) | |
| 483-612, gnl|Hg17|chr1 (23153243-23153372) | |
| 483-612, gnl|loxAfr1|scaffold_6346 (32929-32749) | |
| 483-612, gnl|mm7|chr4 (135931043-135930865) | |
| 483-612, gnl|Mm7|chr4 (135931027-135930898) | |
| 483-612, gnl|monDom2|scaffold_90 (5125924-5126094) | |
| 483-612, gnl|oryCun1|scaffold_199648 (65616-65441) | |
| 483-612, gnl|panTro1|chr1 (23518459-23518638) | |
| 483-612, gnl|rheMac2|chr1 (25659541-25659720) | |
| 483-612, gnl|rn3|chr5 (155311121-155310947) | |
| 483-612, gnl|tetNig1|chr10 (7338929-7338789) | |
| 483-612, gnl|xenTro1|scaffold_439 (1032060-1032215) | |
| 758-1258, gnl|bosTau2|chr2 (83136865-83136357) | |
| 758-1258, gnl|Hg17|chr1 (23154976-23155486) | |
| 758-1258, gnl|Mm7|chr4 (135929472-135928986) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-371, gnl|bosTau2|chr2 (83140867-83140659) | |
| 164-371, gnl|Hg17|chr1 (23150769-23150978) | |
| 164-371, gnl|Mm7|chr4 (135932851-135932648) | |
| 483-612, gnl|bosTau2|chr2 (83138672-83138543) | |
| 483-612, gnl|canFam2|chr2 (79208413-79208234) | |
| 483-612, gnl|danRer3|chr17 (41878256-41878419) | |
| 483-612, gnl|dasNov1|scaffold_14752 (49196-49017) | |
| 483-612, gnl|echTel1|scaffold_317735 (128642-128464) | |
| 483-612, gnl|fr1|chrUn (217097153-217097294) | |
| 483-612, gnl|galGal2|chr23 (1631485-1631314) | |
| 483-612, gnl|hg17|chr1 (23153225-23153404) | |
| 483-612, gnl|Hg17|chr1 (23153243-23153372) | |
| 483-612, gnl|loxAfr1|scaffold_6346 (32929-32749) | |
| 483-612, gnl|mm7|chr4 (135931043-135930865) | |
| 483-612, gnl|Mm7|chr4 (135931027-135930898) | |
| 483-612, gnl|monDom2|scaffold_90 (5125924-5126094) | |
| 483-612, gnl|oryCun1|scaffold_199648 (65616-65441) | |
| 483-612, gnl|panTro1|chr1 (23518459-23518638) | |
| 483-612, gnl|rheMac2|chr1 (25659541-25659720) | |
| 483-612, gnl|rn3|chr5 (155311121-155310947) | |
| 483-612, gnl|tetNig1|chr10 (7338929-7338789) | |
| 483-612, gnl|xenTro1|scaffold_439 (1032060-1032215) | |
| 758-1258, gnl|bosTau2|chr2 (83136865-83136357) | |
| 758-1258, gnl|Hg17|chr1 (23154976-23155486) | |
| 758-1258, gnl|Mm7|chr4 (135929472-135928986) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) |