Non-Coding RNA Search

Ss1.1-Pig4-TMW8025G06.5

Sequence:


               
               TTAAGGCCATTGTCACTGGGAAAGACTGTCCCCACATGAAAGAGAAAAGCGCTCTGAAAC
AGAACAAGGAAGTGTTGGAATTGGCTTTCTCCATCCTGTATGACCCCGATGAGACCTTAA
ACTTCATTGCACCTAATAAGTATGAGTACTGCATCTGGATCGATGGCCTCAGTGCCCTTC
TGGGGAAGGACATGTCCAGCGAGCTGACCAAGAGTGACCTGGACACCCTGCTAAGCATGG
AGATGAAGCTGCGGCTGCTGGACCTGGAGAATATCCAGATCCCCGAGGCCCCTCCGCCGG
TGCCCAAGGAGCCCAGCAGCTATGACTTCGTCTATCACTACGGCTGAGGCCAGAGCCAGA
GTCAGCGGCACCCAGCAAGGGACTTGGGGCCCAGGAGAAACATTCACAGTCTGGTGCCTT
GTCTTTTGCTTGTACAGAATCTGTAGTGACTGTGGTGGCCAGTCAATGCCAGTCACTCCT
CAAACCCACCTCGGACCACCCAGAGCTTCCTCTTGGTCCCTGTCCACTCTGAGTCGTGAA
GGCGGGTGCTCTGCCCGCCCCGTCACCGTGGAGCTTGGGATCGGGCCGTGAGGAATGAAC
AGCGCACGCCCTTGCCTTCCAGGCCAAGAAACTGCTTCTTGAGCTGGAGTTAAGAACAGC
CACTCACCTTTTCTAACTGAGCCCGCTCGCCAGTCAGCTGGCTCTCCATGTGGGCCAGAG
CTGGCCCAGGACAGGCTGCCTGCAGAGGACACATGTGCTGAGCGTGTTGAGAGCCATGGG
GAGGCTGCCTTTGGGAGCCCGTGCCTGTGTCTCAGATCTAAGTGGAGGCCTCGGCCTTTG
CGTAGTAGATGCCTTGCCCCTGCTTTTGCCGTCTTCGTGAGGGCTCATCCTGGCCTCGTC
CAAGGCCATCATGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGCCGCCGAGGTCTGGCTC
TGACATCTCTGGTCTCCAGAGCCACCGGATCCTCCTGCTCACACAGTTGGGTGGGCAGAT
GGACATTTCTCCCTACAAGGCCTCAGTCGCTCATCCTGGCAAGTCAGAGACAAGCAGGCT
AAGTCCCACCCTCTTAGTCTCAAGGGACTCTACAGGGAAAGCCTAGATGTGGCCTCGGCC
CAGACTGAGGTGAGGTCACTAGATTCCACGTCCCCCCCTTTGTCTTTTCCTTCTTCGGGG
AGAAATCGCCCCCTAACCTGAATGGCAGCCTTCCCGTTTGCTTCCCTTTGGCCTTCCAGA
CTCAGGAGGCTTGCCTGTCCTTCCTCTCTGGCCCAGCGCTGTGGTTCCTCCCATTGGCTT
TGATTTCAGGGAGCCGGCTGGGGCCAGGCAAGGCCACAGCTGTGCCAGTGGGCCTTCCCT
GGTGCTGCAGCGCTTGTAAACCACACGCACAGCCTCTCTCCTTGGCCACGTGTAAACACA
GGGGCATTCAGTATTGGTAGCCTGGCATGGTGGGTACTGCCCAATGAAGAGGGTACTATA
TATTTTCTTTACTATAGGCCATACTTATACAGACGTGTATATATATTTATATAAGATCTA
CCTATCCTAGGATGGAATGTTGGAGGGAAAATAAAATGGGAGGCCAAAAAACAAAAAGGT
AACACTTCCAGTTGTGGGCTAAGATTGTAACCTGAGTGGCTGGGAGCTTCCTGTCAGTAA
CCATGTTTTCAATAAATACTCTTTCATGTACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGGCCATTGTCACTGGGAAAGACTGTCCCCACATGAAAGAGAAAAGCGCTCTGAAAC
AGAACAAGGAAGTGTTGGAATTGGCTTTCTCCATCCTGTATGACCCCGATGAGACCTTAA
ACTTCATTGCACCTAATAAGTATGAGTACTGCATCTGGATCGATGGCCTCAGTGCCCTTC
TGGGGAAGGACATGTCCAGCGAGCTGACCAAGAGTGACCTGGACACCCTGCTAAGCATGG
AGATGAAGCTGCGGCTGCTGGACCTGGAGAATATCCAGATCCCCGAGGCCCCTCCGCCGG
TGCCCAAGGAGCCCAGCAGCTATGACTTCGTCTATCACTACGGCTGAGGCCAGAGCCAGA
GTCAGCGGCACCCAGCAAGGGACTTGGGGCCCAGGAGAAACATTCACAGTCTGGTGCCTT
GTCTTTTGCTTGTACAGAATCTGTAGTGACTGTGGTGGCCAGTCAATGCCAGTCACTCCT
CAAACCCACCTCGGACCACCCAGAGCTTCCTCTTGGTCCCTGTCCACTCTGAGTCGTGAA
GGCGGGTGCTCTGCCCGCCCCGTCACCGTGGAGCTTGGGATCGGGCCGTGAGGAATGAAC
AGCGCACGCCCTTGCCTTCCAGGCCAAGAAACTGCTTCTTGAGCTGGAGTTAAGAACAGC
CACTCACCTTTTCTAACTGAGCCCGCTCGCCAGTCAGCTGGCTCTCCATGTGGGCCAGAG
CTGGCCCAGGACAGGCTGCCTGCAGAGGACACATGTGCTGAGCGTGTTGAGAGCCATGGG
GAGGCTGCCTTTGGGAGCCCGTGCCTGTGTCTCAGATCTAAGTGGAGGCCTCGGCCTTTG
CGTAGTAGATGCCTTGCCCCTGCTTTTGCCGTCTTCGTGAGGGCTCATCCTGGCCTCGTC
CAAGGCCATCATGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGCCGCCGAGGTCTGGCTC
TGACATCTCTGGTCTCCAGAGCCACCGGATCCTCCTGCTCACACAGTTGGGTGGGCAGAT
GGACATTTCTCCCTACAAGGCCTCAGTCGCTCATCCTGGCAAGTCAGAGACAAGCAGGCT
AAGTCCCACCCTCTTAGTCTCAAGGGACTCTACAGGGAAAGCCTAGATGTGGCCTCGGCC
CAGACTGAGGTGAGGTCACTAGATTCCACGTCCCCCCCTTTGTCTTTTCCTTCTTCGGGG
AGAAATCGCCCCCTAACCTGAATGGCAGCCTTCCCGTTTGCTTCCCTTTGGCCTTCCAGA
CTCAGGAGGCTTGCCTGTCCTTCCTCTCTGGCCCAGCGCTGTGGTTCCTCCCATTGGCTT
TGATTTCAGGGAGCCGGCTGGGGCCAGGCAAGGCCACAGCTGTGCCAGTGGGCCTTCCCT
GGTGCTGCAGCGCTTGTAAACCACACGCACAGCCTCTCTCCTTGGCCACGTGTAAACACA
GGGGCATTCAGTATTGGTAGCCTGGCATGGTGGGTACTGCCCAATGAAGAGGGTACTATA
TATTTTCTTTACTATAGGCCATACTTATACAGACGTGTATATATATTTATATAAGATCTA
CCTATCCTAGGATGGAATGTTGGAGGGAAAATAAAATGGGAGGCCAAAAAACAAAAAGGT
AACACTTCCAGTTGTGGGCTAAGATTGTAACCTGAGTGGCTGGGAGCTTCCTGTCAGTAA
CCATGTTTTCAATAAATACTCTTTCATGTACAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5FVI2_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5FVI2_RAT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               185-344, - strand, RNAz p=0.890595
               

               
               463-581, + strand, RNAz p=0.937842
               

               
               957-1075, - strand, RNAz p=0.754306
               

               
               1293-1410, no strand, RNAz p=0.994292

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-344, - strand, RNAz p=0.890595
               

               
               463-581, + strand, RNAz p=0.937842
               

               
               957-1075, - strand, RNAz p=0.754306
               

               
               1293-1410, no strand, RNAz p=0.994292

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK021718, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK021718, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               145-927, gnl|bosTau2|chr13 (55122036-55121269)
               

               
               145-927, gnl|Hg17|chr20 (44429608-44428852)
               

               
               145-927, gnl|Mm7|chr2 (165031217-165030516)
               


               
               957-1410, gnl|bosTau2|chr13 (55121271-55120831)
               

               
               957-1410, gnl|Hg17|chr20 (44428854-44428400)
               

               
               957-1410, gnl|Mm7|chr2 (165030518-165030102)
               


               
               1437-1712, gnl|bosTau2|chr13 (55120827-55120540)
               

               
               1437-1712, gnl|Hg17|chr20 (44428373-44428098)
               

               
               1437-1712, gnl|Mm7|chr2 (165030098-165029809)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-927, gnl|bosTau2|chr13 (55122036-55121269)
               

               
               145-927, gnl|Hg17|chr20 (44429608-44428852)
               

               
               145-927, gnl|Mm7|chr2 (165031217-165030516)
               


               
               957-1410, gnl|bosTau2|chr13 (55121271-55120831)
               

               
               957-1410, gnl|Hg17|chr20 (44428854-44428400)
               

               
               957-1410, gnl|Mm7|chr2 (165030518-165030102)
               


               
               1437-1712, gnl|bosTau2|chr13 (55120827-55120540)
               

               
               1437-1712, gnl|Hg17|chr20 (44428373-44428098)
               

               
               1437-1712, gnl|Mm7|chr2 (165030098-165029809)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cbr (0.383926)
               

               
               cki (0.330469)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               cki (0.330469)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	185-344, - strand, RNAz p=0.890595
	463-581, + strand, RNAz p=0.937842
	957-1075, - strand, RNAz p=0.754306
	1293-1410, no strand, RNAz p=0.994292

	145-927, gnl\|bosTau2\|chr13 (55122036-55121269)
	145-927, gnl\|Hg17\|chr20 (44429608-44428852)
	145-927, gnl\|Mm7\|chr2 (165031217-165030516)

	957-1410, gnl\|bosTau2\|chr13 (55121271-55120831)
	957-1410, gnl\|Hg17\|chr20 (44428854-44428400)
	957-1410, gnl\|Mm7\|chr2 (165030518-165030102)

	1437-1712, gnl\|bosTau2\|chr13 (55120827-55120540)
	1437-1712, gnl\|Hg17\|chr20 (44428373-44428098)
	1437-1712, gnl\|Mm7\|chr2 (165030098-165029809)

	cbr (0.383926)
	cki (0.330469)
	ste (0.270416)
	ecc (0.23007)
	ece (0.229305)
	cmu (0.186393)
	fco (0.157208)
	cag (0.151194)
	lun (0.150489)
	hyp (0.142837)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)