Non-Coding RNA Search

Ss1.1-Pig4-TMW8025G11.3

Sequence:


               
               GGGATGGAGTATATAAAATTGGGAATTAAAAAAAAAAGTTTTGAGTGTTTTAACATGCTG
TTTGGAAGAAGTTATCGAGTGGAGGAGGAAAGGTTGAAAATGCAGGAAAGTGGGGATTAG
TGATGGAACAAGTCCTGGAGAGCAGACGGGGGTGGCACTGACAGTCCCTGTGCAGGGATT
ACCCTCCGGCAGGAGCCTGGTGGCTTCTGTCGTAATAGGAGGAAACAGCGCTGACATTCA
GCCGGTTTGCACTGGTACGGCTCAACCAGTTGTTAAAACACTTCTGTACCAGTTAGTAAG
TAGTATAAGAGTAACTGCAATAAGCAGTAAAAGTAATTAATAAAATAAATTATAATATGA
ACTCATCAGTTCAAACTAATTAAGAGATCGCGACAGCCATAGGTAAATGGGCTTCCTGCT
GCACCTGAGACGCTTTGCAGCGCCGTCTGCCGGTGGGGCAGTACCACTGCAAGCTGAGAG
GCTGCTTTGCGCCTTATTAAACTCTTTGAAATTGCCTGTTTAAATTATCTTTGAATTATG
GAGTTGCTACTGCTTCTGAATAGTTTAGCTTCTACGTTGATTTTATTGCTAGTACATTGT
CATTCTTGTGTCACTAGTAGTAGTGTTTTAATATTTACGAATTCAAGAATTTTTAATAAA
ATATTAAAGCCAAACGAATAAAGAGATTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATGGAGTATATAAAATTGGGAATTAAAAAAAAAAGTTTTGAGTGTTTTAACATGCTG
TTTGGAAGAAGTTATCGAGTGGAGGAGGAAAGGTTGAAAATGCAGGAAAGTGGGGATTAG
TGATGGAACAAGTCCTGGAGAGCAGACGGGGGTGGCACTGACAGTCCCTGTGCAGGGATT
ACCCTCCGGCAGGAGCCTGGTGGCTTCTGTCGTAATAGGAGGAAACAGCGCTGACATTCA
GCCGGTTTGCACTGGTACGGCTCAACCAGTTGTTAAAACACTTCTGTACCAGTTAGTAAG
TAGTATAAGAGTAACTGCAATAAGCAGTAAAAGTAATTAATAAAATAAATTATAATATGA
ACTCATCAGTTCAAACTAATTAAGAGATCGCGACAGCCATAGGTAAATGGGCTTCCTGCT
GCACCTGAGACGCTTTGCAGCGCCGTCTGCCGGTGGGGCAGTACCACTGCAAGCTGAGAG
GCTGCTTTGCGCCTTATTAAACTCTTTGAAATTGCCTGTTTAAATTATCTTTGAATTATG
GAGTTGCTACTGCTTCTGAATAGTTTAGCTTCTACGTTGATTTTATTGCTAGTACATTGT
CATTCTTGTGTCACTAGTAGTAGTGTTTTAATATTTACGAATTCAAGAATTTTTAATAAA
ATATTAAAGCCAAACGAATAAAGAGATTAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-280, - strand, RNAz p=0.885593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-280, - strand, RNAz p=0.885593

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-690, gnl|bosTau2|chr23 (20933911-20934598)
               

               
               7-690, gnl|Hg17|chr6 (30617805-30617133)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-690, gnl|bosTau2|chr23 (20933911-20934598)
               

               
               7-690, gnl|Hg17|chr6 (30617805-30617133)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.478469)
               

               
               spc (0.340097)
               

               
               cte (0.29274)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               spc (0.340097)
               

               
               cte (0.29274)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	7-690, gnl\|bosTau2\|chr23 (20933911-20934598)
	7-690, gnl\|Hg17\|chr6 (30617805-30617133)

	cbe (0.478469)
	spc (0.340097)
	cte (0.29274)
	cut (0.169924)
	fco (0.157208)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	kid (0.129735)
	sug (0.127291)