Non-Coding RNA Search

Ss1.1-Pig4-TMW8025G20.5

Sequence:


               
               GTCGTGGAGGAGAAGCAGGAAGGAACGGCCCACTTCCCTGAATGTCTTCCCCCTGGCGGA
CGGCATGGTACGTGCCCAGACGGGGGGCAAGCTCGTGCCTGCGGGGGACCACTGGCACCT
GAGCGACCTCGGCCAGCTGCAGCTCAGCGCCAGCTACCAGGTTTCGTAGCCGTGCTGTGG
AGTGAGGGCCTTCTCCCCGTCGCCCCTCGCTCACCCGGGGAGCCCAGGCTTAGCAGCTTC
CCCCAATTAGTGGACCTGTCCCGAGGTGTGACCGCAGTGGAGACCCGGGAGCAGCGCGGG
AGGGCAAGGCCGCAGGCGGGGTGCTGCTGCTCAGGCTCCATTCGTCCAGGCCGGCCTCCC
CGCAGCCAGGGCGTGCCCAGCTGTCGGGCCGAGCTTAGTGAGCACCTCCCAGCACACCCC
AAAGCCACGAGGCCAGACGGGGGTCACCCTTCTAGTACCTGAGGTTAGGACTGCAGCCAG
GAGAACGTCAGAGGCCGCTTCTCTTCTTTGGGCTCTTCCTACCCACCTGTCTGAGCTCCG
GGGCTCCGGGAGGGAAAGGCAGACGGCCCGGGTGGGAGCCATGAGGGTCCCTGGGAAGGC
CCAGTGCGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGTGGAGGAGAAGCAGGAAGGAACGGCCCACTTCCCTGAATGTCTTCCCCCTGGCGGA
CGGCATGGTACGTGCCCAGACGGGGGGCAAGCTCGTGCCTGCGGGGGACCACTGGCACCT
GAGCGACCTCGGCCAGCTGCAGCTCAGCGCCAGCTACCAGGTTTCGTAGCCGTGCTGTGG
AGTGAGGGCCTTCTCCCCGTCGCCCCTCGCTCACCCGGGGAGCCCAGGCTTAGCAGCTTC
CCCCAATTAGTGGACCTGTCCCGAGGTGTGACCGCAGTGGAGACCCGGGAGCAGCGCGGG
AGGGCAAGGCCGCAGGCGGGGTGCTGCTGCTCAGGCTCCATTCGTCCAGGCCGGCCTCCC
CGCAGCCAGGGCGTGCCCAGCTGTCGGGCCGAGCTTAGTGAGCACCTCCCAGCACACCCC
AAAGCCACGAGGCCAGACGGGGGTCACCCTTCTAGTACCTGAGGTTAGGACTGCAGCCAG
GAGAACGTCAGAGGCCGCTTCTCTTCTTTGGGCTCTTCCTACCCACCTGTCTGAGCTCCG
GGGCTCCGGGAGGGAAAGGCAGACGGCCCGGGTGGGAGCCATGAGGGTCCCTGGGAAGGC
CCAGTGCGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26330792|dbj|BAC29126.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26330792|dbj|BAC29126.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               14-190, gnl|bosTau2|chr25 (2874827-2874651)
               

               
               14-190, gnl|canFam2|chr6 (42197136-42196998)
               

               
               14-190, gnl|danRer3|chr3 (8924922-8925075)
               

               
               14-190, gnl|dasNov1|scaffold_162135 (3848-3695)
               

               
               14-190, gnl|fr1|chrUn (94584110-94583956)
               

               
               14-190, gnl|galGal2|chrUn (38859760-38859913)
               

               
               14-190, gnl|hg17|chr16 (1733329-1733482)
               

               
               14-190, gnl|Hg17|chr16 (1733332-1733509)
               

               
               14-190, gnl|mm7|chr17 (23101302-23101149)
               

               
               14-190, gnl|Mm7|chr17 (23101297-23101122)
               

               
               14-190, gnl|monDom2|scaffold_5 (122057313-122057160)
               

               
               14-190, gnl|panTro1|chr18 (1813589-1813742)
               

               
               14-190, gnl|rheMac2|chr20 (1728027-1728180)
               

               
               14-190, gnl|rn3|chr10 (14167303-14167150)
               

               
               14-190, gnl|xenTro1|scaffold_6 (5465729-5465579)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-190, gnl|bosTau2|chr25 (2874827-2874651)
               

               
               14-190, gnl|canFam2|chr6 (42197136-42196998)
               

               
               14-190, gnl|danRer3|chr3 (8924922-8925075)
               

               
               14-190, gnl|dasNov1|scaffold_162135 (3848-3695)
               

               
               14-190, gnl|fr1|chrUn (94584110-94583956)
               

               
               14-190, gnl|galGal2|chrUn (38859760-38859913)
               

               
               14-190, gnl|hg17|chr16 (1733329-1733482)
               

               
               14-190, gnl|Hg17|chr16 (1733332-1733509)
               

               
               14-190, gnl|mm7|chr17 (23101302-23101149)
               

               
               14-190, gnl|Mm7|chr17 (23101297-23101122)
               

               
               14-190, gnl|monDom2|scaffold_5 (122057313-122057160)
               

               
               14-190, gnl|panTro1|chr18 (1813589-1813742)
               

               
               14-190, gnl|rheMac2|chr20 (1728027-1728180)
               

               
               14-190, gnl|rn3|chr10 (14167303-14167150)
               

               
               14-190, gnl|xenTro1|scaffold_6 (5465729-5465579)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ute (0.132784)

	14-190, gnl\|bosTau2\|chr25 (2874827-2874651)
	14-190, gnl\|canFam2\|chr6 (42197136-42196998)
	14-190, gnl\|danRer3\|chr3 (8924922-8925075)
	14-190, gnl\|dasNov1\|scaffold_162135 (3848-3695)
	14-190, gnl\|fr1\|chrUn (94584110-94583956)
	14-190, gnl\|galGal2\|chrUn (38859760-38859913)
	14-190, gnl\|hg17\|chr16 (1733329-1733482)
	14-190, gnl\|Hg17\|chr16 (1733332-1733509)
	14-190, gnl\|mm7\|chr17 (23101302-23101149)
	14-190, gnl\|Mm7\|chr17 (23101297-23101122)
	14-190, gnl\|monDom2\|scaffold_5 (122057313-122057160)
	14-190, gnl\|panTro1\|chr18 (1813589-1813742)
	14-190, gnl\|rheMac2\|chr20 (1728027-1728180)
	14-190, gnl\|rn3\|chr10 (14167303-14167150)
	14-190, gnl\|xenTro1\|scaffold_6 (5465729-5465579)