Ss1.1-Pig4-TMW8025H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATCAGGAGCGAATATAGGAAACGAGGATTCCAGGAGGTAGTCACCCCAAACATCTACA ACAGCCGACTCTGGGTGACCTCGGGCCACTGGCAGCACTACAGCGATAACATGTTCTCCT TTGAGGTGGAGAAGGAGCTCTTTGCTCTGAAACCCATGAACTGCCCAGGACACTGCCTTA TGTTTGATCATCGGCCCAGATCCTGGCGTGAGTTGCCTCTGAGAATAGCTGATTTTGGGG TGCTTCATAGGAATGAGCTGTCAGGAGCACTCACAGGACTCACGCGGGTGCGAAGGTTCC AGCAGGATGATGCTCACATATTCTGTGCCATGGAGCAGATTGAGGATGAAATAAAAGGTT GTTTGGATTTTCTGCGTACAGTATATAGCATATTTGGATTTTCCTTTAAATTGAACCTGT CTACTCGCCCAGAAAAATTCCTTGGAGATATTGAAGTATGGAATCAAGCTGAGAAACAAC TGGAAAATAGTCTGAATGAGTTTGGTGAAAAGTGGGAATTAAATCCTGGAGATGGAGCTT TCTATGGTCCAAAGATTGACATACAGATTAAAGACGCCATTGGTCGCTACCACCAGTGTG CAACAATCCAGTTGGATTTTCAGTTGCCCATCAGATTTAATCTTACTTTTGTGAGCCCTG ATGGCGATGATAAGAAAAGGCCAGTGATTATCCATAGAGCTATCTTGGGATCAGTGGAAA GAATGATTGCTATTCTCACTGAAAACTATGGAGGCAAATGGCCCTTCTGGCTGTCTCCTC GCCAAGTAATGGTAGTTCCAGTGGGACCAACATGTGATGAATATGCCCAAAAGGTACAGC AGCAATTCCACGATGCTAAATTCATGGTGGACATCGATCTGGATCCAGGCTGTACATTAA ACAAGAAGATTAGAAATGCACAGTTAGCACAGTACAACTTCATCCTAGTTGTTGGTGAGA AAGAGAAAAGCAGCGGCACTGTGAATATCCGCACCAGAGATAATAAGGTGCATGGAGAAC GCACTATTTCTGAAACCGTCGGGCGGCTGGAGCAGCTCAGGCAGTCCCGCAGCAAACAGG CAGAAGAAGAATTTTAAGGAACACCTTGGCCCAGATTGGCTCCGTGGAAAAAGATGAATA TGTTTCCATAACAATAACTTTGTGCTCTGGAAAACATCAGTGTATAATGACTTTGGAATA GTTTGGCAGAGTCTGCAGAGATGACTGCAGGATCAACCTTTTTTTGACCTAGACAGATTT TAGACAATATATATTTGAAGGAGGTAATTAAAAGTGACACAGTAAAATGATTTTATTCAT TAAGTTTCTAGGTACTGGAAATAAACCATGAGGCATGCTCTAAAGTAATGGGGAAGAATG TTCTTATAAATTTAATGCAGCTGAAATAAAATTTTTTCAAATTTGATTAACATACAAGAA AGATTAGAATTGGGTTATAATGTAAAAATAAAAATTTTAATCACTGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATCAGGAGCGAATATAGGAAACGAGGATTCCAGGAGGTAGTCACCCCAAACATCTACA ACAGCCGACTCTGGGTGACCTCGGGCCACTGGCAGCACTACAGCGATAACATGTTCTCCT TTGAGGTGGAGAAGGAGCTCTTTGCTCTGAAACCCATGAACTGCCCAGGACACTGCCTTA TGTTTGATCATCGGCCCAGATCCTGGCGTGAGTTGCCTCTGAGAATAGCTGATTTTGGGG TGCTTCATAGGAATGAGCTGTCAGGAGCACTCACAGGACTCACGCGGGTGCGAAGGTTCC AGCAGGATGATGCTCACATATTCTGTGCCATGGAGCAGATTGAGGATGAAATAAAAGGTT GTTTGGATTTTCTGCGTACAGTATATAGCATATTTGGATTTTCCTTTAAATTGAACCTGT CTACTCGCCCAGAAAAATTCCTTGGAGATATTGAAGTATGGAATCAAGCTGAGAAACAAC TGGAAAATAGTCTGAATGAGTTTGGTGAAAAGTGGGAATTAAATCCTGGAGATGGAGCTT TCTATGGTCCAAAGATTGACATACAGATTAAAGACGCCATTGGTCGCTACCACCAGTGTG CAACAATCCAGTTGGATTTTCAGTTGCCCATCAGATTTAATCTTACTTTTGTGAGCCCTG ATGGCGATGATAAGAAAAGGCCAGTGATTATCCATAGAGCTATCTTGGGATCAGTGGAAA GAATGATTGCTATTCTCACTGAAAACTATGGAGGCAAATGGCCCTTCTGGCTGTCTCCTC GCCAAGTAATGGTAGTTCCAGTGGGACCAACATGTGATGAATATGCCCAAAAGGTACAGC AGCAATTCCACGATGCTAAATTCATGGTGGACATCGATCTGGATCCAGGCTGTACATTAA ACAAGAAGATTAGAAATGCACAGTTAGCACAGTACAACTTCATCCTAGTTGTTGGTGAGA AAGAGAAAAGCAGCGGCACTGTGAATATCCGCACCAGAGATAATAAGGTGCATGGAGAAC GCACTATTTCTGAAACCGTCGGGCGGCTGGAGCAGCTCAGGCAGTCCCGCAGCAAACAGG CAGAAGAAGAATTTTAAGGAACACCTTGGCCCAGATTGGCTCCGTGGAAAAAGATGAATA TGTTTCCATAACAATAACTTTGTGCTCTGGAAAACATCAGTGTATAATGACTTTGGAATA GTTTGGCAGAGTCTGCAGAGATGACTGCAGGATCAACCTTTTTTTGACCTAGACAGATTT TAGACAATATATATTTGAAGGAGGTAATTAAAAGTGACACAGTAAAATGATTTTATTCAT TAAGTTTCTAGGTACTGGAAATAAACCATGAGGCATGCTCTAAAGTAATGGGGAAGAATG TTCTTATAAATTTAATGCAGCTGAAATAAAATTTTTTCAAATTTGATTAACATACAAGAA AGATTAGAATTGGGTTATAATGTAAAAATAAAAATTTTAATCACTGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 654-761, + strand, RNAz p=0.823529 | |
| 654-761, + strand, RNAz p=0.96275 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 654-761, + strand, RNAz p=0.823529 | |
| 654-761, + strand, RNAz p=0.96275 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 8-175, gnl|bosTau2|chr19 (20068389-20068556) | |
| 8-175, gnl|Hg17|chr5 (33495556-33495723) | |
| 8-175, gnl|Mm7|chr15 (11447914-11447747) | |
| 337-476, gnl|bosTau2|chr19 (20069952-20070091) | |
| 337-476, gnl|Hg17|chr5 (33497018-33497157) | |
| 337-476, gnl|Mm7|chr15 (11446391-11446252) | |
| 654-761, gnl|bosTau2|chr19 (20070836-20070943) | |
| 654-761, gnl|canFam2|chr4 (77417220-77417144) | |
| 654-761, gnl|danRer3|chr5 (46051948-46051872) | |
| 654-761, gnl|dasNov1|scaffold_37271 (48786-48862) | |
| 654-761, gnl|echTel1|scaffold_283331 (55090-55004) | |
| 654-761, gnl|fr1|chrUn (175505589-175505665) | |
| 654-761, gnl|galGal2|chrZ_random (9350785-9350861) | |
| 654-761, gnl|hg17|chr5 (33497955-33498031) | |
| 654-761, gnl|Hg17|chr5 (33497959-33498066) | |
| 654-761, gnl|loxAfr1|scaffold_59268 (1569-1640) | |
| 654-761, gnl|mm7|chr15 (11445547-11445470) | |
| 654-761, gnl|Mm7|chr15 (11445540-11445433) | |
| 654-761, gnl|monDom2|scaffold_20 (39426544-39426467) | |
| 654-761, gnl|oryCun1|scaffold_172859 (41122-41046) | |
| 654-761, gnl|panTro1|chr4 (98837260-98837336) | |
| 654-761, gnl|rheMac2|chr6 (33553840-33553916) | |
| 654-761, gnl|rn3|chr2 (60700117-60700040) | |
| 654-761, gnl|tetNig1|chr12 (5555158-5555082) | |
| 654-761, gnl|xenTro1|scaffold_1136 (188520-188443) | |
| 946-1477, gnl|bosTau2|chr19 (20074973-20075495) | |
| 946-1477, gnl|Hg17|chr5 (33503419-33503941) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-175, gnl|bosTau2|chr19 (20068389-20068556) | |
| 8-175, gnl|Hg17|chr5 (33495556-33495723) | |
| 8-175, gnl|Mm7|chr15 (11447914-11447747) | |
| 337-476, gnl|bosTau2|chr19 (20069952-20070091) | |
| 337-476, gnl|Hg17|chr5 (33497018-33497157) | |
| 337-476, gnl|Mm7|chr15 (11446391-11446252) | |
| 654-761, gnl|bosTau2|chr19 (20070836-20070943) | |
| 654-761, gnl|canFam2|chr4 (77417220-77417144) | |
| 654-761, gnl|danRer3|chr5 (46051948-46051872) | |
| 654-761, gnl|dasNov1|scaffold_37271 (48786-48862) | |
| 654-761, gnl|echTel1|scaffold_283331 (55090-55004) | |
| 654-761, gnl|fr1|chrUn (175505589-175505665) | |
| 654-761, gnl|galGal2|chrZ_random (9350785-9350861) | |
| 654-761, gnl|hg17|chr5 (33497955-33498031) | |
| 654-761, gnl|Hg17|chr5 (33497959-33498066) | |
| 654-761, gnl|loxAfr1|scaffold_59268 (1569-1640) | |
| 654-761, gnl|mm7|chr15 (11445547-11445470) | |
| 654-761, gnl|Mm7|chr15 (11445540-11445433) | |
| 654-761, gnl|monDom2|scaffold_20 (39426544-39426467) | |
| 654-761, gnl|oryCun1|scaffold_172859 (41122-41046) | |
| 654-761, gnl|panTro1|chr4 (98837260-98837336) | |
| 654-761, gnl|rheMac2|chr6 (33553840-33553916) | |
| 654-761, gnl|rn3|chr2 (60700117-60700040) | |
| 654-761, gnl|tetNig1|chr12 (5555158-5555082) | |
| 654-761, gnl|xenTro1|scaffold_1136 (188520-188443) | |
| 946-1477, gnl|bosTau2|chr19 (20074973-20075495) | |
| 946-1477, gnl|Hg17|chr5 (33503419-33503941) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| sto (0.359648) | |
| spc (0.340097) | |
| fco (0.314416) | |
| jej (0.296765) | |
| lin (0.291206) | |
| csk (0.281492) | |
| thg (0.253582) | |
| tra (0.246184) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| nca (0.136874) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| sto (0.359648) | |
| spc (0.340097) | |
| fco (0.314416) | |
| jej (0.296765) | |
| lin (0.291206) | |
| csk (0.281492) | |
| thg (0.253582) | |
| tra (0.246184) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| nca (0.136874) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| eru (0.120048) | |
| pgl (0.118483) |