Non-Coding RNA Search

Ss1.1-Pig4-TMW8025H17.5

Sequence:


               
               GAGCTGCCGCGGTGGGGAGCGAATCCGTGGCCATGAAGGAGGAGAAGGATCATAGGCCTA
AGGAGAAGCGAGTAACCCTCTTGACTCCCCCGGGGGCCACAGGCAGCGGCGGTGGGGCTT
CGGGGGACAGCACCAAAGGGGAAGATAAGCAGGATCGGAACAAGGAGAAGAAAGAGGCGT
TGAGCAAGGTGGTAATTCGGAGATTACCGCCCACTTTGACCAAGGAGCAGCTTCAGGAAC
ATCTTCAGCCTATGCCTGAGCATGATTATTTTGAGTTTTTTTCTAATGATACTAGTCTGT
ATCCTCACATGTATGCCAGAGCATACATCAACTTTAAAAACCAGGAGGACATTATTTTGT
TCAGGGATCGTTTTGATGGTTATGTATTCCTTGACAATAAAGGTCAGGAATATCCTGCCA
TAGTAGAATTTGCACCCTTTCAAAAAGCTGCAAAAAAGAAGACCAAGAAAAGAGATACTA
AAGTTGGGACTATTGACGATGATCCAGAATATAGAAAATTTTTGGAAAGTTATGCTGCAG
ATAATGAGAAAATGACATCTACTCCAGAGACACTGCTAGAAGAAATAGAAGCAAAAAATA
GAGAATTAATAGCTAAAAAGACAACCCCACTTTTGAGCTTCCTGAAAAACAAGCAGCGGA
TGAGAGAAGAAAAGAGGGAAGAAAGAAGGAGGCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGCCGCGGTGGGGAGCGAATCCGTGGCCATGAAGGAGGAGAAGGATCATAGGCCTA
AGGAGAAGCGAGTAACCCTCTTGACTCCCCCGGGGGCCACAGGCAGCGGCGGTGGGGCTT
CGGGGGACAGCACCAAAGGGGAAGATAAGCAGGATCGGAACAAGGAGAAGAAAGAGGCGT
TGAGCAAGGTGGTAATTCGGAGATTACCGCCCACTTTGACCAAGGAGCAGCTTCAGGAAC
ATCTTCAGCCTATGCCTGAGCATGATTATTTTGAGTTTTTTTCTAATGATACTAGTCTGT
ATCCTCACATGTATGCCAGAGCATACATCAACTTTAAAAACCAGGAGGACATTATTTTGT
TCAGGGATCGTTTTGATGGTTATGTATTCCTTGACAATAAAGGTCAGGAATATCCTGCCA
TAGTAGAATTTGCACCCTTTCAAAAAGCTGCAAAAAAGAAGACCAAGAAAAGAGATACTA
AAGTTGGGACTATTGACGATGATCCAGAATATAGAAAATTTTTGGAAAGTTATGCTGCAG
ATAATGAGAAAATGACATCTACTCCAGAGACACTGCTAGAAGAAATAGAAGCAAAAAATA
GAGAATTAATAGCTAAAAAGACAACCCCACTTTTGAGCTTCCTGAAAAACAAGCAGCGGA
TGAGAGAAGAAAAGAGGGAAGAAAGAAGGAGGCGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47169314|pdb|1UW4|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47169314|pdb|1UW4|C

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-677, gnl|bosTau2|chr12 (36233412-36232829)
               

               
               96-677, gnl|Hg17|chrX (118768710-118757071)
               

               
               96-677, gnl|Mm7|chrX (31869931-31859420)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-677, gnl|bosTau2|chr12 (36233412-36232829)
               

               
               96-677, gnl|Hg17|chrX (118768710-118757071)
               

               
               96-677, gnl|Mm7|chrX (31869931-31859420)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               ski (0.146735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ski (0.146735)

	96-677, gnl\|bosTau2\|chr12 (36233412-36232829)
	96-677, gnl\|Hg17\|chrX (118768710-118757071)
	96-677, gnl\|Mm7\|chrX (31869931-31859420)