Ss1.1-Pig4-TMW8025I14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCACAGCGTGAGCTACCCCGACAACCTGACCTACCGCGATCTCTACTACTTCCTCCT GGCCCCAACTCTGTGCTACGAGCTCAACTTTCCCCGCTCCCCGCGCATCCGAAAGCGCTT CCTGCTGCGGCGGCTCCTGGAGATGCTGTTCCTCATCCAGCTGCAGGTGGGGCTGATCCA GCAGTGGATGGTCCCCACCATCCAGAACTCCATGAAGCCCTTCAAGGACATGGACTACTC ACGCATCATCGAGCGCCTCCTGAAGCTGGCGGTGCCCAACCACCTCATCTGGCTCATCTT CTTCTACTGGCTCTTCCATTCCTGCCTGAACGCTGTGGCTGAGCTCATGCAGTTTGGAGA CCGGGAGTTCTACCGGGACTGGTGGAACTCGGAGTCTGTCACCTACTTCTGGCAGAACTG GAACATCCCTGTACACAAGTGGTGCCTCAGACACTTCTACAAGCCCATGCTCCGGCGGGG CAGCAGCAAGTGGGTAGCCAGGATGGGGGTGTTCCTGGCTTCAGCCTTCTTCCACGAGTA CCTGGTGAGCATCCCTCTGCGCATGTTCCGCCTCTGGGCCTTCACGGGCATGATGGCTCA GATCCCGCTGGCTTGGATAGTGGGCCGCTTCTTCCGTGGCAACTACGGCAACGCGGCTGT GTGGCTGTCGCTCATCATCGGGCAGCCGGTGGCCGTGCTCATGTACGTCCATGACTACTA CGTGCTCCACCACGAGGCCCCGACAGCGGGGGCCTGAGCCGCTCCGGGCTGGCCCTCTGC ACTGCCTGCGCTCCTCACTGCCTGCAGCCAGCGCCCCCGGTCCCGAGCTGGGGAGGGGCC TGGCTGGTCCATGCTGCCTCCTGGCCCTCAGGAGGCCTCTCCGCCCCTATGGGGCTCCCT CCTGCTCTCAGGATGGCAGGCAGGCACAGGCCTCTGCCAGTGGGAGGTGCTGGTGCTCTG GAAACGCTGCCCATCTGCCCGAGGGTCCAAAGGTGTCAATAAAGTGCTGTCCACGGCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCACAGCGTGAGCTACCCCGACAACCTGACCTACCGCGATCTCTACTACTTCCTCCT GGCCCCAACTCTGTGCTACGAGCTCAACTTTCCCCGCTCCCCGCGCATCCGAAAGCGCTT CCTGCTGCGGCGGCTCCTGGAGATGCTGTTCCTCATCCAGCTGCAGGTGGGGCTGATCCA GCAGTGGATGGTCCCCACCATCCAGAACTCCATGAAGCCCTTCAAGGACATGGACTACTC ACGCATCATCGAGCGCCTCCTGAAGCTGGCGGTGCCCAACCACCTCATCTGGCTCATCTT CTTCTACTGGCTCTTCCATTCCTGCCTGAACGCTGTGGCTGAGCTCATGCAGTTTGGAGA CCGGGAGTTCTACCGGGACTGGTGGAACTCGGAGTCTGTCACCTACTTCTGGCAGAACTG GAACATCCCTGTACACAAGTGGTGCCTCAGACACTTCTACAAGCCCATGCTCCGGCGGGG CAGCAGCAAGTGGGTAGCCAGGATGGGGGTGTTCCTGGCTTCAGCCTTCTTCCACGAGTA CCTGGTGAGCATCCCTCTGCGCATGTTCCGCCTCTGGGCCTTCACGGGCATGATGGCTCA GATCCCGCTGGCTTGGATAGTGGGCCGCTTCTTCCGTGGCAACTACGGCAACGCGGCTGT GTGGCTGTCGCTCATCATCGGGCAGCCGGTGGCCGTGCTCATGTACGTCCATGACTACTA CGTGCTCCACCACGAGGCCCCGACAGCGGGGGCCTGAGCCGCTCCGGGCTGGCCCTCTGC ACTGCCTGCGCTCCTCACTGCCTGCAGCCAGCGCCCCCGGTCCCGAGCTGGGGAGGGGCC TGGCTGGTCCATGCTGCCTCCTGGCCCTCAGGAGGCCTCTCCGCCCCTATGGGGCTCCCT CCTGCTCTCAGGATGGCAGGCAGGCACAGGCCTCTGCCAGTGGGAGGTGCTGGTGCTCTG GAAACGCTGCCCATCTGCCCGAGGGTCCAAAGGTGTCAATAAAGTGCTGTCCACGGCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 678-792, - strand, RNAz p=0.7041 | |
| 825-970, - strand, RNAz p=0.972446 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 678-792, - strand, RNAz p=0.7041 | |
| 825-970, - strand, RNAz p=0.972446 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 41-148, gnl|bosTau2|chr14 (13998-14105) | |
| 41-148, gnl|Hg17|chr8 (145512489-145512382) | |
| 41-148, gnl|Mm7|chr15 (76586175-76586068) | |
| 271-385, gnl|bosTau2|chr14 (14827-14941) | |
| 271-385, gnl|canFam2|chr13 (40777887-40778032) | |
| 271-385, gnl|canFam2|chr13 (40778032-40777866) | |
| 271-385, gnl|danRer3|chrUn (17716756-17716591) | |
| 271-385, gnl|danRer3|chrUn (17716594-17716771) | |
| 271-385, gnl|dasNov1|scaffold_104944 (4352-4469) | |
| 271-385, gnl|dasNov1|scaffold_104944 (4469-4331) | |
| 271-385, gnl|echTel1|scaffold_229222 (3574-3413) | |
| 271-385, gnl|echTel1|scaffold_229222 (3413-3564) | |
| 271-385, gnl|fr1|chrUn (166498524-166498651) | |
| 271-385, gnl|fr1|chrUn (166498652-166498524) | |
| 271-385, gnl|hg17|chr8 (145511777-145511920) | |
| 271-385, gnl|Hg17|chr8 (145511917-145511803) | |
| 271-385, gnl|hg17|chr8_random (418220-418380) | |
| 271-385, gnl|loxAfr1|scaffold_157339 (1153-1039) | |
| 271-385, gnl|loxAfr1|scaffold_157339 (1039-1151) | |
| 271-385, gnl|mm7|chr15 (76585491-76585628) | |
| 271-385, gnl|mm7|chr15 (76585628-76585474) | |
| 271-385, gnl|Mm7|chr15 (76585625-76585511) | |
| 271-385, gnl|monDom2|scaffold_79 (2881379-2881522) | |
| 271-385, gnl|monDom2|scaffold_79 (2881522-2881377) | |
| 271-385, gnl|oryCun1|scaffold_194103 (2008-1864) | |
| 271-385, gnl|oryCun1|scaffold_194103 (1864-2018) | |
| 271-385, gnl|panTro1|chr7 (148761021-148761164) | |
| 271-385, gnl|panTro1|chr7 (148761164-148761004) | |
| 271-385, gnl|rheMac2|chr8 (146943645-146943788) | |
| 271-385, gnl|rheMac2|chr8 (146943788-146943628) | |
| 271-385, gnl|rn3|chr7 (114587195-114587332) | |
| 271-385, gnl|rn3|chr7 (114587332-114587175) | |
| 271-385, gnl|tetNig1|chr8 (7123628-7123777) | |
| 271-385, gnl|tetNig1|chr8 (7123768-7123628) | |
| 271-385, gnl|xenTro1|scaffold_1888 (75419-75275) | |
| 271-385, gnl|xenTro1|scaffold_1888 (75275-75419) | |
| 599-1014, gnl|bosTau2|chr14 (15481-15910) | |
| 599-1014, gnl|canFam2|chr13 (40776957-40777200) | |
| 599-1014, gnl|echTel1|scaffold_229222 (4398-4209) | |
| 599-1014, gnl|hg17|chr8 (145510767-145511023) | |
| 599-1014, gnl|Hg17|chr8 (145511183-145510767) | |
| 599-1014, gnl|loxAfr1|scaffold_8957 (37099-36860) | |
| 599-1014, gnl|mm7|chr15 (76584576-76584787) | |
| 599-1014, gnl|Mm7|chr15 (76584944-76584578) | |
| 599-1014, gnl|monDom2|scaffold_716 (13527-13797) | |
| 599-1014, gnl|panTro1|chr7 (148759926-148760183) | |
| 599-1014, gnl|rheMac2|chr8 (146942638-146942894) | |
| 599-1014, gnl|rn3|chr7 (114586286-114586494) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-148, gnl|bosTau2|chr14 (13998-14105) | |
| 41-148, gnl|Hg17|chr8 (145512489-145512382) | |
| 41-148, gnl|Mm7|chr15 (76586175-76586068) | |
| 271-385, gnl|bosTau2|chr14 (14827-14941) | |
| 271-385, gnl|canFam2|chr13 (40777887-40778032) | |
| 271-385, gnl|canFam2|chr13 (40778032-40777866) | |
| 271-385, gnl|danRer3|chrUn (17716756-17716591) | |
| 271-385, gnl|danRer3|chrUn (17716594-17716771) | |
| 271-385, gnl|dasNov1|scaffold_104944 (4352-4469) | |
| 271-385, gnl|dasNov1|scaffold_104944 (4469-4331) | |
| 271-385, gnl|echTel1|scaffold_229222 (3574-3413) | |
| 271-385, gnl|echTel1|scaffold_229222 (3413-3564) | |
| 271-385, gnl|fr1|chrUn (166498524-166498651) | |
| 271-385, gnl|fr1|chrUn (166498652-166498524) | |
| 271-385, gnl|hg17|chr8 (145511777-145511920) | |
| 271-385, gnl|Hg17|chr8 (145511917-145511803) | |
| 271-385, gnl|hg17|chr8_random (418220-418380) | |
| 271-385, gnl|loxAfr1|scaffold_157339 (1153-1039) | |
| 271-385, gnl|loxAfr1|scaffold_157339 (1039-1151) | |
| 271-385, gnl|mm7|chr15 (76585491-76585628) | |
| 271-385, gnl|mm7|chr15 (76585628-76585474) | |
| 271-385, gnl|Mm7|chr15 (76585625-76585511) | |
| 271-385, gnl|monDom2|scaffold_79 (2881379-2881522) | |
| 271-385, gnl|monDom2|scaffold_79 (2881522-2881377) | |
| 271-385, gnl|oryCun1|scaffold_194103 (2008-1864) | |
| 271-385, gnl|oryCun1|scaffold_194103 (1864-2018) | |
| 271-385, gnl|panTro1|chr7 (148761021-148761164) | |
| 271-385, gnl|panTro1|chr7 (148761164-148761004) | |
| 271-385, gnl|rheMac2|chr8 (146943645-146943788) | |
| 271-385, gnl|rheMac2|chr8 (146943788-146943628) | |
| 271-385, gnl|rn3|chr7 (114587195-114587332) | |
| 271-385, gnl|rn3|chr7 (114587332-114587175) | |
| 271-385, gnl|tetNig1|chr8 (7123628-7123777) | |
| 271-385, gnl|tetNig1|chr8 (7123768-7123628) | |
| 271-385, gnl|xenTro1|scaffold_1888 (75419-75275) | |
| 271-385, gnl|xenTro1|scaffold_1888 (75275-75419) | |
| 599-1014, gnl|bosTau2|chr14 (15481-15910) | |
| 599-1014, gnl|canFam2|chr13 (40776957-40777200) | |
| 599-1014, gnl|echTel1|scaffold_229222 (4398-4209) | |
| 599-1014, gnl|hg17|chr8 (145510767-145511023) | |
| 599-1014, gnl|Hg17|chr8 (145511183-145510767) | |
| 599-1014, gnl|loxAfr1|scaffold_8957 (37099-36860) | |
| 599-1014, gnl|mm7|chr15 (76584576-76584787) | |
| 599-1014, gnl|Mm7|chr15 (76584944-76584578) | |
| 599-1014, gnl|monDom2|scaffold_716 (13527-13797) | |
| 599-1014, gnl|panTro1|chr7 (148759926-148760183) | |
| 599-1014, gnl|rheMac2|chr8 (146942638-146942894) | |
| 599-1014, gnl|rn3|chr7 (114586286-114586494) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ill (0.526778) | |
| jej (0.494609) | |
| nje (0.33184) | |
| nco (0.161734) | |
| csp (0.161186) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| jej (0.494609) | |
| nje (0.33184) | |
| nco (0.161734) | |
| csp (0.161186) | |
| jca (0.11396) | |
| eje (0.0988338) |